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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1422 1423 1424 1425 1426 1427 1428 1429 1430 ... 1720 1721 » 71251-71300 / 86044 show all
dgrover-gatk	SNP	tv	map_l150_m2_e0	het	98.8320	99.2002	98.4666	81.2986	7194	58	7192	112	20	17.8571
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.0981	99.2004	98.9959	68.2271	13647	110	13606	138	117	84.7826
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.0981	99.2004	98.9959	68.2271	13647	110	13606	138	117	84.7826
qzeng-custom	SNP	ti	segdup	homalt	99.3042	99.2005	99.4081	87.0359	7445	60	7390	44	39	88.6364
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5600	99.2006	99.9221	57.7897	3847	31	3847	3	0	0.0000
hfeng-pmm2	SNP	ti	map_l150_m2_e1	het	99.0257	99.2009	98.8512	79.6610	12911	104	12907	150	13	8.6667
raldana-dualsentieon	SNP	*	map_l125_m1_e0	*	99.1433	99.2014	99.0854	69.5094	44965	362	44959	415	15	3.6145
gduggal-snapfb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.1579	99.2021	97.1354	67.6223	1119	9	1119	33	3	9.0909
ciseli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	97.1138	99.2021	95.1115	61.2625	1119	9	1109	57	18	31.5789
ckim-dragen	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	93.2099	99.2021	87.9004	61.3834	746	6	741	102	102	100.0000
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.5863	99.2023	97.9779	71.0352	3731	30	3731	77	75	97.4026
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.5863	99.2023	97.9779	71.0352	3731	30	3731	77	75	97.4026
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5502	99.2026	99.9003	37.1632	18038	145	18035	18	3	16.6667
ltrigg-rtg2	INDEL	I1_5	HG002complexvar	het	99.3853	99.2028	99.5685	52.2881	18044	145	17305	75	44	58.6667
ndellapenna-hhga	SNP	ti	map_siren	*	99.5376	99.2028	99.8746	51.9628	99555	800	99557	125	60	48.0000
ltrigg-rtg2	SNP	ti	map_l150_m0_e0	homalt	99.5276	99.2032	99.8541	71.1520	2739	22	2738	4	4	100.0000
eyeh-varpipe	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.8642	99.2036	98.5271	69.1157	11460	92	11104	166	51	30.7229
eyeh-varpipe	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.8642	99.2036	98.5271	69.1157	11460	92	11104	166	51	30.7229
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.1543	99.2037	99.1050	72.6597	30895	248	30895	279	24	8.6022
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.1543	99.2037	99.1050	72.6597	30895	248	30895	279	24	8.6022
bgallagher-sentieon	INDEL	D1_5	map_l100_m2_e0	het	98.5784	99.2038	97.9608	84.7707	1246	10	1249	26	4	15.3846
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.3525	99.2040	99.5015	66.2630	997	8	998	5	4	80.0000
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.3735	99.2041	99.5436	81.7204	4113	33	4144	19	8	42.1053
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5364	99.2047	99.8702	65.5442	16840	135	16932	22	12	54.5455
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5364	99.2047	99.8702	65.5442	16840	135	16932	22	12	54.5455
cchapple-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.3884	99.2047	99.5729	68.2811	1871	15	1865	8	7	87.5000
asubramanian-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.0742	99.2047	98.9440	72.8770	1871	15	1874	20	6	30.0000
raldana-dualsentieon	SNP	*	map_l100_m2_e0	het	99.0893	99.2047	98.9741	68.2725	46030	369	46019	477	7	1.4675
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5541	99.2049	99.9057	74.5256	2121	17	2119	2	1	50.0000
jmaeng-gatk	SNP	*	*	homalt	99.5965	99.2051	99.9909	17.4792	1170780	9381	1170757	106	69	65.0943
hfeng-pmm3	SNP	*	map_l250_m0_e0	homalt	98.8124	99.2051	98.4227	92.6442	624	5	624	10	5	50.0000
ltrigg-rtg1	SNP	tv	map_siren	*	99.4402	99.2053	99.6762	52.0914	45565	365	45564	148	13	8.7838
jli-custom	INDEL	I1_5	*	*	99.4941	99.2055	99.7844	57.0293	149467	1197	149502	323	257	79.5666
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.2924	99.2063	99.3785	88.6959	1750	14	1759	11	11	100.0000
gduggal-bwavard	INDEL	D6_15	map_l100_m1_e0	het	77.6064	99.2063	63.7306	90.0052	125	1	123	70	58	82.8571
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.1782	99.2063	99.1501	88.9866	1750	14	1750	15	13	86.6667
ckim-gatk	INDEL	D1_5	map_siren	*	98.1530	99.2066	97.1215	84.5697	3501	28	3509	104	9	8.6539
astatham-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4939	99.2069	99.7825	64.6320	1376	11	1376	3	0	0.0000
ckim-vqsr	INDEL	*	map_l100_m2_e0	homalt	99.2070	99.2070	99.2070	85.1821	1251	10	1251	10	5	50.0000
jli-custom	INDEL	*	map_l100_m2_e0	homalt	99.1284	99.2070	99.0499	83.3333	1251	10	1251	12	6	50.0000
ckim-gatk	INDEL	*	map_l100_m2_e0	homalt	99.1677	99.2070	99.1284	85.1721	1251	10	1251	11	6	54.5455
ltrigg-rtg2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5837	99.2071	99.9631	70.9548	5380	43	5419	2	0	0.0000
ltrigg-rtg2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5837	99.2071	99.9631	70.9548	5380	43	5419	2	0	0.0000
ndellapenna-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4308	99.2074	99.6552	61.9169	28036	224	28038	97	74	76.2887
ciseli-custom	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	95.2928	99.2077	91.6751	67.8866	10017	80	9999	908	277	30.5066
egarrison-hhga	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4954	99.2083	99.7842	37.6168	7393	59	7397	16	10	62.5000
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	93.7656	99.2084	88.8889	61.0497	376	3	376	47	46	97.8723
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	94.3538	99.2084	89.9522	60.9346	376	3	376	42	42	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	93.7656	99.2084	88.8889	61.0497	376	3	376	47	46	97.8723
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	94.0000	99.2084	89.3112	60.6909	376	3	376	45	44	97.7778

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