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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
70951-71000 / 86044 show all
egarrison-hhgaSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4577
99.1576
99.7596
63.2532
17420148174304221
50.0000
rpoplin-dv42SNP*map_l100_m2_e1het
99.2783
99.1577
99.3992
66.0072
4650339546491281142
50.5338
raldana-dualsentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.4171
99.1580
99.6775
58.2394
247321247380
0.0000
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.4571
99.1580
99.7580
57.7755
247321247360
0.0000
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.5772
99.1580
100.0000
57.3253
247321247300
ltrigg-rtg1SNPtvlowcmp_SimpleRepeat_diTR_11to50het
99.4316
99.1580
99.7066
64.6054
306226305992
22.2222
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_diTR_11to50het
99.3508
99.1580
99.5443
63.5414
3062263058142
14.2857
qzeng-customSNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.1334
99.1581
99.1088
47.3320
2120182113191
5.2632
cchapple-customINDELD1_5**
99.4223
99.1584
99.6877
55.8052
1455101235145535456300
65.7895
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4201
99.1588
99.6829
84.8446
943894331
33.3333
hfeng-pmm3INDELI1_5HG002complexvarhet
99.5309
99.1588
99.9057
57.5378
1803615318015176
35.2941
hfeng-pmm3SNPtvmap_l150_m2_e0het
99.2203
99.1589
99.2819
76.4022
7191617189525
9.6154
eyeh-varpipeSNPtiHG002compoundhet*
97.7572
99.1589
96.3946
39.7398
1733114712860481101
20.9979
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.5072
99.1591
99.8579
31.1980
141512140522
100.0000
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
99.3613
99.1592
99.5643
51.5120
36563136561613
81.2500
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.4476
99.1594
99.7375
38.8443
342129342092
22.2222
ndellapenna-hhgaSNPtvmap_siren*
99.4997
99.1596
99.8422
55.1910
45544386455447230
41.6667
asubramanian-gatkINDELI1_5func_cdshomalt
99.5781
99.1597
100.0000
31.3953
118111800
eyeh-varpipeINDELI1_5func_cdshomalt
99.1798
99.1597
99.2000
23.7805
118112411
100.0000
ghariani-varprowlSNP*map_l100_m2_e1het
97.8415
99.1599
96.5577
75.0527
46504394465071658256
15.4403
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.3929
99.1600
99.6269
75.2923
50764350741913
68.4211
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.4090
99.1601
99.6591
54.8028
25146213251448660
69.7674
egarrison-hhgaSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4287
99.1605
99.6983
57.8100
551644675518016788
52.6946
hfeng-pmm3SNPtimap_l250_m2_e0*
99.1712
99.1613
99.1811
88.8122
4966424966415
12.1951
hfeng-pmm2SNPtimap_l250_m2_e0*
98.8259
99.1613
98.4927
89.9448
4966424966769
11.8421
raldana-dualsentieonSNPtimap_l125_m1_e0*
99.1157
99.1614
99.0701
69.2148
290892462908527311
4.0293
jpowers-varprowlSNPtvHG002complexvar*
99.3235
99.1623
99.4852
24.4097
24409020622442851264803
63.5285
ltrigg-rtg1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.3191
99.1623
99.4764
77.1586
947895051
20.0000
ckim-vqsrINDELD1_5HG002complexvar*
99.4499
99.1625
99.7391
58.6120
32441274324948569
81.1765
dgrover-gatkSNP*map_l150_m2_e1homalt
99.5206
99.1629
99.8808
71.2164
1172899117281410
71.4286
hfeng-pmm1INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.3017
99.1632
99.4406
55.8914
711671143
75.0000
hfeng-pmm2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.8186
99.1632
98.4765
57.3034
71167111110
90.9091
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.7500
99.1632
98.3402
56.4720
71167111211
91.6667
gduggal-snapfbSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
85.6403
99.1633
75.3631
71.5296
17421147175405734127
2.2149
qzeng-customINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
98.0670
99.1636
96.9944
39.3861
21341829699242
45.6522
rpoplin-dv42INDELI1_5HG002complexvarhet
99.3340
99.1643
99.5043
57.7801
18037152180659080
88.8889
dgrover-gatkSNPtvmap_l150_m1_e0het
98.7950
99.1650
98.4277
80.3450
688858688611020
18.1818
gduggal-bwafbSNPtvmap_l100_m2_e0*
98.8866
99.1651
98.6097
70.4745
248242092482435055
15.7143
hfeng-pmm2SNP*map_l150_m2_e1het
98.9487
99.1652
98.7332
79.6403
201931702018725923
8.8803
ckim-dragenSNPtvmap_l100_m2_e1het
98.0614
99.1655
96.9816
75.2723
158051331580849232
6.5041
hfeng-pmm2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5469
99.1667
99.9300
67.8732
142812142810
0.0000
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.4429
99.1667
99.7207
68.4651
142812142841
25.0000
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.8235
99.1667
98.4828
87.3627
7146714114
36.3636
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.3046
99.1667
99.4429
87.9933
714671443
75.0000
asubramanian-gatkINDEL*segduphomalt
99.1667
99.1667
99.1667
93.6609
952895287
87.5000
ltrigg-rtg2SNPtimap_siren*
99.4787
99.1669
99.7924
46.9044
995188369951320730
14.4928
raldana-dualsentieonSNPtimap_l150_m0_e0homalt
99.4913
99.1670
99.8177
71.1111
273823273854
80.0000
hfeng-pmm2SNPtimap_l150_m1_e0het
99.0031
99.1673
98.8394
78.5331
122671031226314413
9.0278
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.6979
99.1678
96.2710
69.5061
4409374363169161
95.2663
dgrover-gatkSNP*map_l150_m2_e0*
99.1679
99.1680
99.1679
78.4218
315872653158126560
22.6415