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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
70551-70600 / 86044 show all
rpoplin-dv42INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.4674
99.0988
97.8440
74.2336
47836435477871053987
93.7322
jmaeng-gatkINDELD1_5map_l250_m1_e0het
91.2863
99.0991
84.6154
97.2792
1101110201
5.0000
dgrover-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.2077
99.0991
99.3166
75.7056
440443630
0.0000
dgrover-gatkINDELD1_5map_l250_m1_e0het
97.3451
99.0991
95.6522
96.1513
110111050
0.0000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4340
99.0991
99.7712
76.2758
440443610
0.0000
gduggal-snapvardINDELD1_5map_l250_m1_e0het
73.8070
99.0991
58.8000
95.2866
110114710316
15.5340
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
98.9825
99.0991
98.8662
75.3356
440443650
0.0000
astatham-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4340
99.0991
99.7712
75.6817
440443610
0.0000
ckim-dragenINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.3567
99.0991
99.6157
72.3838
132012129653
60.0000
ckim-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
98.9825
99.0991
98.8662
76.1105
440443650
0.0000
ckim-dragenINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
98.6466
99.0991
98.1982
76.5823
440443680
0.0000
jli-customINDELD1_5map_l250_m1_e0het
96.9163
99.0991
94.8276
94.9301
110111061
16.6667
jlack-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.8242
99.0991
98.5507
72.0171
13201212921915
78.9474
hfeng-pmm3INDELD1_5map_l250_m1_e0het
97.3451
99.0991
95.6522
94.4923
110111051
20.0000
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.3107
99.0992
99.5231
80.1218
68216268873315
45.4545
ckim-dragenSNP*map_l125_m2_e1*
98.4159
99.0996
97.7415
74.8940
46777425467831081120
11.1008
raldana-dualsentieonSNPtvmap_l125_m2_e1het
98.8982
99.0998
98.6974
74.5288
1045895104561381
0.7246
jli-customSNPtimap_l125_m1_e0*
99.3574
99.1001
99.6162
66.6526
290712642906911241
36.6071
ltrigg-rtg2INDEL*func_cds*
99.3248
99.1011
99.5495
36.5714
441444220
0.0000
qzeng-customSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.3033
99.1013
99.5062
65.8995
121311120963
50.0000
gduggal-bwafbSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
98.9805
99.1013
98.8599
68.0375
1213111214148
57.1429
hfeng-pmm3SNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.5487
99.1014
100.0000
35.3153
341931341600
hfeng-pmm1SNP*map_l150_m1_e0*
99.3336
99.1016
99.5666
73.6726
303342753032813237
28.0303
hfeng-pmm2SNPtvmap_l150_m2_e1het
98.8125
99.1018
98.5248
79.6036
728266728010910
9.1743
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.4741
99.1018
99.8492
51.2858
132412132420
0.0000
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
95.7049
99.1018
92.5331
67.6378
13241213261078
7.4766
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.7849
99.1019
98.4699
79.4919
1070497107471672
1.1976
jpowers-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
98.6119
99.1025
98.1262
58.8223
39753639807619
25.0000
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
85.7525
99.1025
75.5722
63.2591
3975364028130233
2.5346
gduggal-bwafbSNPtvmap_l125_m2_e0homalt
99.4828
99.1025
99.8660
70.9836
596354596386
75.0000
asubramanian-gatkINDELD1_5*het
99.3754
99.1025
99.6499
59.9427
8678878686804305126
41.3115
ltrigg-rtg2SNPtvmap_siren*
99.4071
99.1030
99.7130
49.8109
45518412455171319
6.8702
ckim-dragenSNPtimap_l150_m2_e1homalt
99.4457
99.1031
99.7907
67.9320
76246976291615
93.7500
jli-customSNP*map_l125_m2_e0*
99.3286
99.1032
99.5549
68.8474
463044194630120767
32.3671
dgrover-gatkINDEL*map_l100_m1_e0homalt
99.0228
99.1035
98.9422
84.0369
1216111216136
46.1538
egarrison-hhgaINDELD1_5HG002complexvarhomalt
98.5958
99.1036
98.0931
56.9237
105039510494204148
72.5490
rpoplin-dv42SNPtimap_l125_m2_e0*
99.3062
99.1044
99.5088
70.7721
2998727129983148102
68.9189
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.4000
99.1045
99.6973
59.5840
996998831
33.3333
gduggal-bwafbSNPtimap_l100_m1_e0*
99.1029
99.1050
99.1009
66.4175
4750242947504431106
24.5940
eyeh-varpipeSNP*HG002compoundhet*
97.2195
99.1054
95.4041
44.2893
2559123116939816176
21.5686
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.8419
99.1062
98.5790
59.3072
7318667284105100
95.2381
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
95.4367
99.1065
92.0290
69.7242
26622426672310
0.0000
cchapple-customINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.4403
99.1066
99.7762
43.0060
66566080251813
72.2222
rpoplin-dv42SNPtimap_l125_m2_e1*
99.3100
99.1069
99.5138
70.8133
3029627330292148102
68.9189
hfeng-pmm1SNPtimap_l150_m1_e0*
99.3490
99.1071
99.5921
73.5929
19536176195328023
28.7500
bgallagher-sentieonSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.2753
99.1071
99.4439
65.2571
3219293219184
22.2222
cchapple-customINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.4541
99.1074
99.8032
43.2339
11769106116642318
78.2609
jlack-gatkSNPtimap_l100_m2_e0*
97.4962
99.1075
95.9365
74.4561
48524437485172055194
9.4404
mlin-fermikitSNPtvfunc_cds*
99.2667
99.1078
99.4262
22.7208
43323943322514
56.0000
jli-customINDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.4857
99.1089
99.8653
46.8501
667360667395
55.5556