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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
70501-70550 / 86044 show all
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.2066
99.0882
99.3253
55.9755
11193103111897658
76.3158
egarrison-hhgaSNP*map_l125_m2_e1*
99.4493
99.0890
99.8122
70.5609
46772430467728841
46.5909
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.9059
99.0898
98.7227
77.8437
23952223963126
83.8710
hfeng-pmm2SNPtvmap_l150_m2_e0het
98.7968
99.0899
98.5054
79.5966
718666718410910
9.1743
hfeng-pmm1SNP*lowcmp_SimpleRepeat_triTR_11to50het
99.4888
99.0901
99.8907
31.1720
457442457050
0.0000
rpoplin-dv42SNPtimap_l150_m2_e1homalt
99.3872
99.0901
99.6862
73.4415
76237076232423
95.8333
raldana-dualsentieonSNPtvmap_l125_m2_e0het
98.8912
99.0902
98.6930
74.4522
1034795103451371
0.7299
hfeng-pmm3INDELD1_5map_l100_m1_e0het
99.0096
99.0902
98.9292
80.5480
1198111201132
15.3846
jlack-gatkSNPtvmap_l125_m2_e1het
93.0368
99.0903
87.6803
84.5388
104579610455146982
5.5820
hfeng-pmm3INDELD1_5map_l125_m2_e1het
98.7722
99.0909
98.4556
84.6291
7637765122
16.6667
jlack-gatkINDELD1_5map_l125_m2_e1het
92.0567
99.0909
85.9551
90.9534
76377651255
4.0000
hfeng-pmm2INDELD1_5map_l125_m2_e1het
97.9502
99.0909
96.8354
87.4264
7637765252
8.0000
ckim-gatkINDELD1_5map_l125_m2_e1het
94.9121
99.0909
91.0714
91.6749
7637765754
5.3333
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
99.0990
99.0909
99.1071
90.7970
109111110
0.0000
anovak-vgSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
98.9096
99.0913
98.7286
42.0919
21812022522910
34.4828
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.9588
99.0919
98.8260
75.8275
452874154528753841
7.6208
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.9588
99.0919
98.8260
75.8275
452874154528753841
7.6208
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.4468
99.0921
99.8040
75.9768
152814152831
33.3333
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.3136
99.0921
99.5361
73.0198
152814150275
71.4286
ckim-dragenINDELI1_5map_sirenhomalt
99.2562
99.0924
99.4205
77.9401
120111120175
71.4286
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.7413
99.0926
98.3925
58.6124
7317677284119115
96.6387
hfeng-pmm1SNPtvmap_l150_m1_e0*
99.3066
99.0927
99.5213
73.8197
1081399108115214
26.9231
dgrover-gatkSNPtvmap_l150_m1_e0*
99.0155
99.0927
98.9384
77.4338
10813991081111624
20.6897
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.7850
99.0930
98.4789
88.6741
17481617482712
44.4444
egarrison-hhgaSNPtimap_l125_m1_e0*
99.4628
99.0932
99.8351
68.9921
29069266290694824
50.0000
jlack-gatkINDELD1_5map_siren*
96.8891
99.0932
94.7810
83.4660
349732350519313
6.7358
gduggal-bwafbSNPtvlowcmp_SimpleRepeat_diTR_11to50het
96.6316
99.0933
94.2892
74.2061
306028307118641
22.0430
ckim-dragenINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
99.3936
99.0937
99.6953
60.8166
164015163653
60.0000
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.1840
99.0942
99.2740
86.3749
109410109488
100.0000
ltrigg-rtg2INDELD6_15*het
99.2141
99.0942
99.3342
52.7094
11487105113397626
34.2105
jlack-gatkSNPtimap_l100_m1_e0*
97.4794
99.0945
95.9161
72.9428
47497434474902022193
9.5450
gduggal-snapvardSNPtifunc_cdshet
99.3512
99.0945
99.6092
31.0131
84277784113313
39.3939
dgrover-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.4228
99.0946
92.0135
66.0676
2189202189190184
96.8421
bgallagher-sentieonINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
94.2519
99.0946
89.8604
65.5446
2189202189247241
97.5709
ltrigg-rtg2INDELD1_5HG002complexvarhet
99.3002
99.0946
99.5066
51.3766
205771882036810144
43.5644
ckim-dragenSNP*map_l125_m2_e0*
98.4092
99.0947
97.7332
74.8209
46300423463061074120
11.1732
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.1583
99.0954
95.2956
68.4624
3834353788187181
96.7914
ltrigg-rtg1INDEL*map_l125_m2_e1homalt
99.0968
99.0956
99.0979
85.1341
767776973
42.8571
gduggal-bwafbSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.2945
99.0956
99.4942
40.3814
66846166883420
58.8235
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.3889
99.0959
99.6837
47.2135
252123252180
0.0000
jmaeng-gatkINDEL*map_sirenhomalt
99.1343
99.0960
99.1726
81.5411
26312426372215
68.1818
hfeng-pmm1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.2411
99.0960
99.3867
70.6527
37273437272322
95.6522
hfeng-pmm1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.2411
99.0960
99.3867
70.6527
37273437272322
95.6522
gduggal-bwaplatSNPtvfunc_cdshet
99.3960
99.0967
99.6971
49.3090
263324263380
0.0000
bgallagher-sentieonSNPtimap_l150_m0_e0*
98.8263
99.0968
98.5573
80.5178
779071778811420
17.5439
jmaeng-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
99.0868
99.0968
99.0767
50.8276
1031394103029689
92.7083
raldana-dualsentieonSNPtimap_l250_m2_e1homalt
99.4901
99.0971
99.8862
85.3999
175616175621
50.0000
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.2098
99.0971
99.3228
35.3285
439444032
66.6667
gduggal-bwavardSNP*func_cdshomalt
99.5466
99.0973
100.0000
21.7886
691663687400
jli-customSNPtvmap_l100_m1_e0het
99.2078
99.0984
99.3174
64.0498
152781391527710524
22.8571