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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1401 1402 1403 1404 1405 1406 1407 1408 1409 ... 1720 1721 » 70201-70250 / 86044 show all
ghariani-varprowl	SNP	*	map_l100_m2_e0	*	98.3520	99.0401	97.6734	71.9819	73254	710	73257	1745	322	18.4527
jpowers-varprowl	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	98.3288	99.0403	97.6276	52.2232	10629	103	10658	259	68	26.2548
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	97.6596	99.0406	96.3166	82.8425	1342	13	1229	47	42	89.3617
jmaeng-gatk	SNP	*	segdup	homalt	99.4625	99.0412	99.8873	88.3992	10640	103	10640	12	12	100.0000
ltrigg-rtg1	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.2060	99.0415	99.3711	52.8190	310	3	316	2	2	100.0000
hfeng-pmm1	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5185	99.0415	100.0000	36.0825	310	3	310	0	0
bgallagher-sentieon	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5185	99.0415	100.0000	33.4764	310	3	310	0	0
ckim-dragen	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5185	99.0415	100.0000	31.8681	310	3	310	0	0
jlack-gatk	SNP	ti	map_l125_m1_e0	het	95.2550	99.0419	91.7470	82.2690	18091	175	18087	1627	140	8.6048
hfeng-pmm2	INDEL	D1_5	map_l150_m2_e1	het	97.4630	99.0421	95.9335	89.6756	517	5	519	22	2	9.0909
bgallagher-sentieon	INDEL	D1_5	map_l150_m2_e1	het	97.8305	99.0421	96.6480	89.9495	517	5	519	18	3	16.6667
astatham-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.1675	99.0429	99.2924	73.5960	93545	904	93452	666	582	87.3874
ltrigg-rtg1	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.1608	99.0431	99.2788	45.5497	414	4	413	3	0	0.0000
jmaeng-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.5192	99.0431	100.0000	47.9245	414	4	414	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.5192	99.0431	100.0000	47.9899	414	4	414	0	0
gduggal-bwavard	SNP	*	*	*	99.3249	99.0431	99.6083	22.9016	3025405	29229	3004827	11817	3477	29.4237
ckim-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.5192	99.0431	100.0000	47.9899	414	4	414	0	0
cchapple-custom	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.5192	99.0431	100.0000	49.7048	414	4	426	0	0
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.4759	99.0435	99.9122	35.0997	3417	33	3414	3	0	0.0000
hfeng-pmm2	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.4759	99.0435	99.9122	35.7223	3417	33	3414	3	0	0.0000
ndellapenna-hhga	INDEL	*	map_l125_m1_e0	homalt	98.9761	99.0437	98.9086	84.6202	725	7	725	8	6	75.0000
dgrover-gatk	SNP	ti	map_l125_m0_e0	*	99.0401	99.0440	99.0361	76.9678	12640	122	12638	123	30	24.3902
hfeng-pmm3	INDEL	D1_5	map_l100_m2_e0	het	99.0064	99.0446	98.9683	81.1940	1244	12	1247	13	2	15.3846
ghariani-varprowl	SNP	tv	map_l100_m0_e0	het	96.3501	99.0446	93.7983	79.0409	7153	69	7154	473	76	16.0677
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.5075	99.0450	97.9757	72.8173	726	7	726	15	12	80.0000
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.2974	99.0450	97.5610	73.6240	726	7	720	18	14	77.7778
astatham-gatk	SNP	tv	map_l125_m2_e1	homalt	99.4462	99.0451	99.8506	66.8391	6016	58	6016	9	6	66.6667
jpowers-varprowl	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.2932	99.0454	99.5422	62.8527	6952	67	6958	32	4	12.5000
jlack-gatk	SNP	*	map_l125_m1_e0	het	94.3869	99.0455	90.1469	82.7150	28121	271	28115	3073	220	7.1591
jli-custom	INDEL	*	HG002complexvar	het	99.4410	99.0457	99.8394	56.1111	45771	441	45384	73	32	43.8356
gduggal-bwafb	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.0458	99.0458	99.0458	70.6113	519	5	519	5	4	80.0000
ghariani-varprowl	SNP	*	map_l100_m2_e1	*	98.3564	99.0460	97.6764	72.0101	74024	713	74027	1761	324	18.3986
ckim-dragen	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	het	99.1853	99.0462	99.3248	77.9742	1350	13	1324	9	2	22.2222
jli-custom	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	het	98.9286	99.0462	98.8113	76.1938	1350	13	1330	16	10	62.5000
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	98.8307	99.0462	98.6162	73.5809	1350	13	1354	19	4	21.0526
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.4561	99.0468	99.8688	31.9345	4572	44	4568	6	0	0.0000
raldana-dualsentieon	SNP	tv	map_l150_m1_e0	*	98.9969	99.0469	98.9470	74.2022	10808	104	10806	115	3	2.6087
ckim-dragen	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.2418	99.0470	99.4374	74.2668	63817	614	63806	361	326	90.3047
ndellapenna-hhga	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3339	99.0472	99.6223	38.0132	7381	71	7385	28	18	64.2857
jmaeng-gatk	SNP	tv	HG002complexvar	*	99.5035	99.0473	99.9639	22.5835	243807	2345	243715	88	31	35.2273
eyeh-varpipe	SNP	tv	HG002compoundhet	*	97.1567	99.0474	95.3368	45.3099	8838	85	7176	351	78	22.2222
astatham-gatk	SNP	*	map_l125_m1_e0	homalt	99.4624	99.0476	99.8807	63.5573	16744	161	16744	20	16	80.0000
ckim-gatk	SNP	*	HG002compoundhet	het	99.3772	99.0478	99.7088	46.6510	14043	135	14041	41	28	68.2927
ghariani-varprowl	SNP	ti	map_l100_m1_e0	homalt	99.4271	99.0479	99.8092	60.5686	17789	171	17789	34	26	76.4706
jli-custom	SNP	tv	map_l250_m2_e1	homalt	99.3111	99.0486	99.5749	85.5298	937	9	937	4	4	100.0000
bgallagher-sentieon	SNP	tv	map_l250_m2_e1	homalt	99.2585	99.0486	99.4692	86.2982	937	9	937	5	4	80.0000
hfeng-pmm3	INDEL	D1_5	map_l125_m2_e1	*	98.9647	99.0493	98.8803	84.7056	1146	11	1148	13	3	23.0769
hfeng-pmm2	SNP	tv	map_l150_m1_e0	het	98.7581	99.0498	98.4681	78.5736	6880	66	6878	107	10	9.3458
ckim-gatk	INDEL	I1_5	HG002complexvar	*	99.4404	99.0498	99.8341	56.8511	33046	317	33092	55	41	74.5455
hfeng-pmm2	SNP	tv	map_l125_m0_e0	*	98.7817	99.0499	98.5149	77.4668	6568	63	6567	99	13	13.1313

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