PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64651-64700 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I1_5 | segdup | het | 98.3082 | 97.7695 | 98.8528 | 93.0710 | 526 | 12 | 517 | 6 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | segdup | het | 98.2247 | 97.7695 | 98.6842 | 94.9835 | 526 | 12 | 525 | 7 | 1 | 14.2857 | |
| ndellapenna-hhga | INDEL | I1_5 | segdup | het | 98.4089 | 97.7695 | 99.0566 | 94.8166 | 526 | 12 | 525 | 5 | 1 | 20.0000 | |
| asubramanian-gatk | INDEL | I1_5 | segdup | het | 98.4123 | 97.7695 | 99.0637 | 96.0327 | 526 | 12 | 529 | 5 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | * | segdup | * | 97.9435 | 97.7700 | 98.1176 | 98.6833 | 2499 | 57 | 2502 | 48 | 36 | 75.0000 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.2317 | 97.7700 | 98.6978 | 52.2722 | 35776 | 816 | 35699 | 471 | 434 | 92.1444 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 72.1995 | 97.7700 | 57.2314 | 91.8059 | 833 | 19 | 831 | 621 | 50 | 8.0515 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.6521 | 97.7707 | 99.5495 | 74.2085 | 921 | 21 | 884 | 4 | 3 | 75.0000 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.8445 | 97.7707 | 97.9183 | 79.2041 | 1228 | 28 | 1223 | 26 | 7 | 26.9231 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.6882 | 97.7707 | 97.6057 | 78.5372 | 1228 | 28 | 1223 | 30 | 9 | 30.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9790 | 97.7713 | 98.1875 | 54.9936 | 31279 | 713 | 31203 | 576 | 562 | 97.5694 | |
| egarrison-hhga | INDEL | * | map_l125_m2_e0 | het | 97.7762 | 97.7714 | 97.7810 | 87.2105 | 1360 | 31 | 1366 | 31 | 10 | 32.2581 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.5085 | 97.7714 | 99.2568 | 64.1000 | 9476 | 216 | 9482 | 71 | 46 | 64.7887 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 84.4765 | 97.7716 | 74.3644 | 48.9730 | 351 | 8 | 351 | 121 | 119 | 98.3471 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.3970 | 97.7723 | 95.0598 | 71.0826 | 29801 | 679 | 29633 | 1540 | 1434 | 93.1169 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.3970 | 97.7723 | 95.0598 | 71.0826 | 29801 | 679 | 29633 | 1540 | 1434 | 93.1169 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.6173 | 97.7724 | 99.4771 | 72.6068 | 15230 | 347 | 15218 | 80 | 60 | 75.0000 | |
| ltrigg-rtg1 | SNP | * | HG002compoundhet | homalt | 98.8047 | 97.7741 | 99.8572 | 33.1849 | 10542 | 240 | 10491 | 15 | 8 | 53.3333 | |
| bgallagher-sentieon | INDEL | D6_15 | HG002complexvar | * | 98.0701 | 97.7744 | 98.3675 | 58.4379 | 5184 | 118 | 5182 | 86 | 79 | 91.8605 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m2_e0 | het | 97.4578 | 97.7749 | 97.1429 | 86.0457 | 747 | 17 | 748 | 22 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | HG002complexvar | homalt | 93.9581 | 97.7759 | 90.4272 | 60.3886 | 1143 | 26 | 1143 | 121 | 72 | 59.5041 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.5354 | 97.7762 | 99.3066 | 59.4807 | 8222 | 187 | 8306 | 58 | 19 | 32.7586 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.4961 | 97.7763 | 99.2266 | 43.2593 | 20138 | 458 | 20142 | 157 | 149 | 94.9045 | |
| astatham-gatk | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.7032 | 97.7767 | 99.6475 | 68.5461 | 1979 | 45 | 1979 | 7 | 5 | 71.4286 | |
| bgallagher-sentieon | INDEL | D6_15 | * | * | 98.0100 | 97.7771 | 98.2439 | 54.8211 | 25512 | 580 | 25511 | 456 | 416 | 91.2281 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.2341 | 97.7771 | 98.6954 | 80.9079 | 6730 | 153 | 6733 | 89 | 29 | 32.5843 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 97.7778 | 97.7778 | 97.7778 | 90.3433 | 44 | 1 | 44 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m2_e0 | homalt | 95.6522 | 97.7778 | 93.6170 | 95.4457 | 44 | 1 | 44 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.8851 | 44 | 1 | 44 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.8851 | 44 | 1 | 44 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_l250_m2_e0 | homalt | 96.7033 | 97.7778 | 95.6522 | 95.0749 | 44 | 1 | 44 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | func_cds | * | 98.5994 | 97.7778 | 99.4350 | 29.7619 | 176 | 4 | 176 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 88.8889 | 97.7778 | 81.4815 | 79.3103 | 44 | 1 | 44 | 10 | 6 | 60.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 97.7778 | 97.7778 | 97.7778 | 90.5858 | 44 | 1 | 44 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m2_e0 | homalt | 96.7033 | 97.7778 | 95.6522 | 95.2965 | 44 | 1 | 44 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.8764 | 97.7778 | 100.0000 | 60.3604 | 44 | 1 | 44 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m2_e1 | het | 94.6237 | 97.7778 | 91.6667 | 88.4430 | 132 | 3 | 132 | 12 | 7 | 58.3333 | |
| ndellapenna-hhga | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 90.0227 | 44 | 1 | 44 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_siren | homalt | 96.1749 | 97.7778 | 94.6237 | 82.9044 | 88 | 2 | 88 | 5 | 3 | 60.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 87.3563 | 44 | 1 | 44 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 93.6170 | 97.7778 | 89.7959 | 82.5000 | 44 | 1 | 44 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e0 | homalt | 96.7033 | 97.7778 | 95.6522 | 95.0378 | 44 | 1 | 44 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.4231 | 44 | 1 | 44 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.4795 | 97.7778 | 97.1831 | 95.5514 | 44 | 1 | 69 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | func_cds | * | 96.9697 | 97.7778 | 96.1749 | 35.5634 | 176 | 4 | 176 | 7 | 2 | 28.5714 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e0 | homalt | 95.6522 | 97.7778 | 93.6170 | 97.1095 | 44 | 1 | 44 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e1 | het | 76.7442 | 97.7778 | 63.1579 | 89.8936 | 132 | 3 | 132 | 77 | 71 | 92.2078 | |
| ghariani-varprowl | INDEL | * | map_l150_m1_e0 | het | 89.9408 | 97.7778 | 83.2669 | 93.2001 | 836 | 19 | 836 | 168 | 48 | 28.5714 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 85.9388 | 97.7778 | 76.6571 | 63.2415 | 264 | 6 | 266 | 81 | 78 | 96.2963 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e1 | het | 97.0588 | 97.7778 | 96.3504 | 90.9631 | 132 | 3 | 132 | 5 | 0 | 0.0000 | |