PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
63251-63300 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | * | map_l100_m2_e0 | * | 96.9907 | 97.3734 | 96.6111 | 87.1158 | 3596 | 97 | 3592 | 126 | 19 | 15.0794 | |
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.9574 | 97.3744 | 96.5440 | 64.7133 | 2151 | 58 | 2151 | 77 | 74 | 96.1039 | |
| gduggal-bwavard | SNP | * | map_l100_m1_e0 | homalt | 98.6152 | 97.3744 | 99.8881 | 60.4751 | 26294 | 709 | 25878 | 29 | 23 | 79.3103 | |
| gduggal-bwavard | SNP | ti | map_l125_m1_e0 | homalt | 98.6148 | 97.3744 | 99.8872 | 66.1535 | 10755 | 290 | 10628 | 12 | 9 | 75.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 94.1706 | 97.3744 | 91.1708 | 74.9459 | 4710 | 127 | 4750 | 460 | 136 | 29.5652 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 89.5968 | 97.3744 | 82.9698 | 74.5108 | 4710 | 127 | 4755 | 976 | 140 | 14.3443 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.2781 | 97.3753 | 99.1979 | 63.8123 | 742 | 20 | 742 | 6 | 1 | 16.6667 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.1481 | 97.3753 | 98.9333 | 63.7506 | 742 | 20 | 742 | 8 | 4 | 50.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.8892 | 97.3753 | 98.4085 | 66.7402 | 742 | 20 | 742 | 12 | 7 | 58.3333 | |
| qzeng-custom | INDEL | * | HG002compoundhet | homalt | 47.3681 | 97.3761 | 31.2960 | 66.5488 | 668 | 18 | 681 | 1495 | 1295 | 86.6221 | |
| ckim-vqsr | SNP | ti | HG002compoundhet | homalt | 98.6436 | 97.3763 | 99.9445 | 31.0556 | 7200 | 194 | 7200 | 4 | 4 | 100.0000 | |
| gduggal-bwavard | SNP | ti | map_l125_m2_e0 | homalt | 98.6173 | 97.3763 | 99.8904 | 68.4929 | 11060 | 298 | 10932 | 12 | 9 | 75.0000 | |
| gduggal-bwavard | SNP | * | map_l100_m2_e0 | homalt | 98.6138 | 97.3767 | 99.8826 | 62.7969 | 26801 | 722 | 26381 | 31 | 25 | 80.6452 | |
| raldana-dualsentieon | INDEL | * | map_l100_m0_e0 | * | 97.7226 | 97.3768 | 98.0707 | 83.8643 | 1522 | 41 | 1525 | 30 | 4 | 13.3333 | |
| ckim-dragen | INDEL | I6_15 | map_siren | * | 97.5369 | 97.3770 | 97.6974 | 85.1053 | 297 | 8 | 297 | 7 | 4 | 57.1429 | |
| bgallagher-sentieon | INDEL | * | map_l250_m1_e0 | * | 95.9612 | 97.3770 | 94.5860 | 95.9242 | 297 | 8 | 297 | 17 | 4 | 23.5294 | |
| hfeng-pmm3 | INDEL | * | map_l250_m1_e0 | * | 96.4286 | 97.3770 | 95.4984 | 94.9050 | 297 | 8 | 297 | 14 | 4 | 28.5714 | |
| hfeng-pmm2 | INDEL | * | map_l250_m1_e0 | * | 95.8065 | 97.3770 | 94.2857 | 95.7792 | 297 | 8 | 297 | 18 | 4 | 22.2222 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.4186 | 97.3773 | 99.4823 | 27.6981 | 1151 | 31 | 1153 | 6 | 6 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | * | het | 98.1073 | 97.3775 | 98.8481 | 59.1502 | 11288 | 304 | 11242 | 131 | 113 | 86.2595 | |
| hfeng-pmm1 | SNP | tv | map_l250_m0_e0 | het | 97.7193 | 97.3776 | 98.0634 | 92.6176 | 557 | 15 | 557 | 11 | 1 | 9.0909 | |
| ghariani-varprowl | SNP | * | map_l125_m0_e0 | homalt | 98.5153 | 97.3778 | 99.6797 | 71.5507 | 6536 | 176 | 6536 | 21 | 10 | 47.6190 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.1111 | 97.3783 | 98.8550 | 62.7841 | 260 | 7 | 259 | 3 | 1 | 33.3333 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.3051 | 97.3787 | 93.3180 | 50.0419 | 4495 | 121 | 4455 | 319 | 10 | 3.1348 | |
| jli-custom | INDEL | I6_15 | * | het | 98.3728 | 97.3787 | 99.3875 | 54.1020 | 9770 | 263 | 9736 | 60 | 34 | 56.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e0 | * | 97.8940 | 97.3788 | 98.4148 | 87.6287 | 743 | 20 | 745 | 12 | 3 | 25.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m2_e0 | * | 97.3150 | 97.3788 | 97.2513 | 89.0482 | 743 | 20 | 743 | 21 | 3 | 14.2857 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m0_e0 | * | 97.7751 | 97.3790 | 98.1744 | 86.5042 | 483 | 13 | 484 | 9 | 2 | 22.2222 | |
| ckim-isaac | SNP | * | * | het | 98.6547 | 97.3796 | 99.9637 | 16.8583 | 1824505 | 49096 | 1825101 | 663 | 63 | 9.5023 | |
| gduggal-snapfb | SNP | tv | map_l150_m1_e0 | het | 95.6989 | 97.3798 | 94.0751 | 75.4297 | 6764 | 182 | 6764 | 426 | 173 | 40.6103 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.2920 | 97.3799 | 97.2043 | 69.4213 | 1338 | 36 | 1356 | 39 | 10 | 25.6410 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 94.6355 | 97.3799 | 92.0415 | 69.2422 | 1338 | 36 | 1330 | 115 | 100 | 86.9565 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m2_e1 | het | 98.5813 | 97.3804 | 99.8121 | 58.3672 | 18587 | 500 | 18589 | 35 | 4 | 11.4286 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 92.7974 | 97.3813 | 88.6256 | 72.0653 | 595 | 16 | 561 | 72 | 68 | 94.4444 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 95.6210 | 97.3818 | 93.9229 | 89.2161 | 2306 | 62 | 2411 | 156 | 50 | 32.0513 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.8956 | 97.3822 | 98.4144 | 74.9934 | 930 | 25 | 931 | 15 | 13 | 86.6667 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e0 | het | 97.6378 | 97.3822 | 97.8947 | 85.3565 | 744 | 20 | 744 | 16 | 4 | 25.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.3087 | 97.3822 | 99.2529 | 77.8277 | 930 | 25 | 930 | 7 | 5 | 71.4286 | |
| cchapple-custom | INDEL | D1_5 | map_l125_m2_e0 | het | 95.2845 | 97.3822 | 93.2752 | 86.3249 | 744 | 20 | 749 | 54 | 4 | 7.4074 | |
| eyeh-varpipe | INDEL | I1_5 | map_siren | het | 97.1764 | 97.3825 | 96.9713 | 77.3988 | 1637 | 44 | 1889 | 59 | 41 | 69.4915 | |
| bgallagher-sentieon | INDEL | D16_PLUS | HG002complexvar | * | 97.3999 | 97.3828 | 97.4170 | 66.7553 | 1600 | 43 | 1584 | 42 | 31 | 73.8095 | |
| cchapple-custom | INDEL | D1_5 | map_l125_m1_e0 | het | 95.2376 | 97.3829 | 93.1848 | 85.5574 | 707 | 19 | 711 | 52 | 4 | 7.6923 | |
| ckim-dragen | INDEL | D1_5 | map_l125_m1_e0 | het | 96.3840 | 97.3829 | 95.4054 | 88.2297 | 707 | 19 | 706 | 34 | 3 | 8.8235 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.1627 | 97.3832 | 96.9432 | 73.2443 | 6252 | 168 | 6216 | 196 | 67 | 34.1837 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.1627 | 97.3832 | 96.9432 | 73.2443 | 6252 | 168 | 6216 | 196 | 67 | 34.1837 | |
| jli-custom | SNP | * | map_l250_m2_e1 | * | 98.2877 | 97.3832 | 99.2092 | 86.6868 | 7778 | 209 | 7778 | 62 | 30 | 48.3871 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.4896 | 97.3839 | 99.6207 | 39.3186 | 23898 | 642 | 23900 | 91 | 86 | 94.5055 | |
| egarrison-hhga | INDEL | * | map_l150_m1_e0 | * | 97.6046 | 97.3842 | 97.8261 | 98.6310 | 1303 | 35 | 1305 | 29 | 10 | 34.4828 | |
| rpoplin-dv42 | INDEL | * | map_l150_m1_e0 | * | 97.8620 | 97.3842 | 98.3446 | 98.9844 | 1303 | 35 | 1307 | 22 | 10 | 45.4545 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.0475 | 97.3843 | 98.7198 | 54.0333 | 21668 | 582 | 21669 | 281 | 267 | 95.0178 | |