PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
62301-62350 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | * | map_l125_m1_e0 | * | 97.9886 | 97.0574 | 98.9377 | 85.1509 | 2045 | 62 | 2049 | 22 | 4 | 18.1818 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m1_e0 | homalt | 98.5075 | 97.0588 | 100.0000 | 86.4754 | 33 | 1 | 33 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l125_m1_e0 | homalt | 97.0588 | 97.0588 | 97.0588 | 87.4539 | 33 | 1 | 33 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_siren | homalt | 95.6522 | 97.0588 | 94.2857 | 94.7368 | 33 | 1 | 33 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l125_m1_e0 | homalt | 98.5075 | 97.0588 | 100.0000 | 89.5899 | 33 | 1 | 33 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_siren | homalt | 91.6667 | 97.0588 | 86.8421 | 94.1267 | 33 | 1 | 33 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 94.9640 | 97.0588 | 92.9577 | 96.7356 | 66 | 2 | 66 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_siren | homalt | 97.0588 | 97.0588 | 97.0588 | 94.9102 | 33 | 1 | 33 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l125_m1_e0 | homalt | 98.5075 | 97.0588 | 100.0000 | 89.2508 | 33 | 1 | 33 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.0588 | 97.0588 | 97.0588 | 71.0638 | 66 | 2 | 66 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 97.0588 | 97.0588 | 97.0588 | 96.8460 | 66 | 2 | 66 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_siren | homalt | 91.6667 | 97.0588 | 86.8421 | 94.0157 | 33 | 1 | 33 | 5 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l125_m1_e0 | homalt | 98.5075 | 97.0588 | 100.0000 | 89.2857 | 33 | 1 | 33 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_siren | homalt | 89.1892 | 97.0588 | 82.5000 | 94.7368 | 33 | 1 | 33 | 7 | 2 | 28.5714 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 97.0588 | 97.0588 | 97.0588 | 96.9133 | 66 | 2 | 66 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_siren | homalt | 95.6522 | 97.0588 | 94.2857 | 94.7368 | 33 | 1 | 33 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m1_e0 | homalt | 98.5075 | 97.0588 | 100.0000 | 89.5899 | 33 | 1 | 33 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m1_e0 | homalt | 98.5075 | 97.0588 | 100.0000 | 89.4904 | 33 | 1 | 33 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m1_e0 | homalt | 97.0588 | 97.0588 | 97.0588 | 88.0282 | 33 | 1 | 33 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_siren | homalt | 95.6522 | 97.0588 | 94.2857 | 92.8571 | 33 | 1 | 33 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.5075 | 97.0588 | 100.0000 | 69.7248 | 66 | 2 | 66 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m1_e0 | homalt | 98.5075 | 97.0588 | 100.0000 | 87.4046 | 33 | 1 | 33 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_siren | homalt | 94.2857 | 97.0588 | 91.6667 | 92.7419 | 33 | 1 | 33 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l125_m1_e0 | homalt | 98.5075 | 97.0588 | 100.0000 | 87.3563 | 33 | 1 | 33 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m1_e0 | homalt | 98.5075 | 97.0588 | 100.0000 | 86.4754 | 33 | 1 | 33 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m1_e0 | homalt | 98.5075 | 97.0588 | 100.0000 | 81.3253 | 33 | 1 | 31 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m1_e0 | homalt | 98.5075 | 97.0588 | 100.0000 | 85.3774 | 33 | 1 | 31 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_siren | homalt | 92.9577 | 97.0588 | 89.1892 | 94.0419 | 33 | 1 | 33 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m1_e0 | homalt | 98.5075 | 97.0588 | 100.0000 | 89.4569 | 33 | 1 | 33 | 0 | 0 | ||
| jpowers-varprowl | SNP | * | map_l100_m1_e0 | het | 97.3402 | 97.0590 | 97.6230 | 72.4758 | 44025 | 1334 | 44027 | 1072 | 263 | 24.5336 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.6237 | 97.0597 | 98.1943 | 69.6107 | 3433 | 104 | 3426 | 63 | 42 | 66.6667 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e1 | * | 97.3625 | 97.0609 | 97.6659 | 83.8268 | 1354 | 41 | 1339 | 32 | 10 | 31.2500 | |
| cchapple-custom | SNP | tv | map_l150_m2_e1 | * | 96.3274 | 97.0614 | 95.6045 | 79.4325 | 11164 | 338 | 11158 | 513 | 83 | 16.1793 | |
| raldana-dualsentieon | INDEL | * | map_l100_m0_e0 | het | 97.3501 | 97.0617 | 97.6401 | 84.2716 | 991 | 30 | 993 | 24 | 1 | 4.1667 | |
| gduggal-bwavard | SNP | tv | map_l150_m0_e0 | homalt | 98.2846 | 97.0633 | 99.5370 | 78.0859 | 1289 | 39 | 1290 | 6 | 4 | 66.6667 | |
| jpowers-varprowl | SNP | ti | map_l100_m2_e1 | het | 97.5492 | 97.0640 | 98.0394 | 72.8908 | 30051 | 909 | 30053 | 601 | 165 | 27.4542 | |
| ltrigg-rtg1 | INDEL | D6_15 | * | * | 98.2810 | 97.0642 | 99.5288 | 47.5098 | 25326 | 766 | 25133 | 119 | 76 | 63.8655 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.3971 | 97.0646 | 97.7319 | 53.7356 | 14351 | 434 | 14349 | 333 | 323 | 96.9970 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.7436 | 97.0652 | 98.4317 | 54.5032 | 21597 | 653 | 21590 | 344 | 335 | 97.3837 | |
| mlin-fermikit | SNP | tv | HG002complexvar | * | 98.1368 | 97.0653 | 99.2323 | 22.0366 | 238931 | 7224 | 238861 | 1848 | 1739 | 94.1017 | |
| cchapple-custom | SNP | * | map_l100_m0_e0 | het | 95.9513 | 97.0667 | 94.8612 | 75.7604 | 20583 | 622 | 20601 | 1116 | 255 | 22.8495 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.1747 | 97.0673 | 99.3076 | 46.3948 | 10757 | 325 | 10757 | 75 | 72 | 96.0000 | |
| dgrover-gatk | INDEL | * | map_l150_m0_e0 | het | 96.6534 | 97.0674 | 96.2428 | 93.6769 | 331 | 10 | 333 | 13 | 1 | 7.6923 | |
| jli-custom | INDEL | * | map_l150_m0_e0 | het | 97.0674 | 97.0674 | 97.0674 | 91.5678 | 331 | 10 | 331 | 10 | 1 | 10.0000 | |
| jlack-gatk | INDEL | * | map_l150_m0_e0 | het | 88.0882 | 97.0674 | 80.6295 | 94.9157 | 331 | 10 | 333 | 80 | 1 | 1.2500 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 85.5828 | 97.0678 | 76.5280 | 56.7627 | 3178 | 96 | 3606 | 1106 | 1089 | 98.4629 | |
| cchapple-custom | SNP | * | map_l125_m1_e0 | * | 96.8884 | 97.0680 | 96.7095 | 73.1758 | 43998 | 1329 | 43998 | 1497 | 343 | 22.9125 | |
| jli-custom | INDEL | * | HG002compoundhet | het | 95.0677 | 97.0689 | 93.1473 | 77.2493 | 3974 | 120 | 3738 | 275 | 245 | 89.0909 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 61.3598 | 97.0699 | 44.8576 | 61.9828 | 5433 | 164 | 5465 | 6718 | 6663 | 99.1813 | |
| hfeng-pmm3 | INDEL | I6_15 | HG002complexvar | het | 98.4917 | 97.0701 | 99.9556 | 58.8257 | 2286 | 69 | 2250 | 1 | 1 | 100.0000 | |