PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
62001-62050 / 86044 show all | |||||||||||||||
| jlack-gatk | SNP | * | map_l250_m0_e0 | * | 91.3907 | 96.9555 | 86.4301 | 95.6372 | 2070 | 65 | 2070 | 325 | 28 | 8.6154 | |
| egarrison-hhga | SNP | * | map_l250_m0_e0 | * | 98.0810 | 96.9555 | 99.2330 | 92.5099 | 2070 | 65 | 2070 | 16 | 6 | 37.5000 | |
| rpoplin-dv42 | SNP | * | map_l250_m0_e0 | * | 97.4806 | 96.9555 | 98.0114 | 92.0139 | 2070 | 65 | 2070 | 42 | 27 | 64.2857 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.8792 | 96.9561 | 94.8260 | 86.0126 | 4109 | 129 | 4142 | 226 | 11 | 4.8673 | |
| ghariani-varprowl | SNP | ti | map_l150_m0_e0 | homalt | 98.3468 | 96.9576 | 99.7764 | 75.9674 | 2677 | 84 | 2677 | 6 | 4 | 66.6667 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.5197 | 96.9598 | 98.0861 | 47.0350 | 2073 | 65 | 2050 | 40 | 13 | 32.5000 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 94.8271 | 96.9609 | 92.7851 | 60.5360 | 3350 | 105 | 3498 | 272 | 223 | 81.9853 | |
| rpoplin-dv42 | SNP | tv | map_l250_m1_e0 | homalt | 98.2249 | 96.9626 | 99.5204 | 86.9197 | 830 | 26 | 830 | 4 | 4 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.5368 | 96.9631 | 98.1174 | 69.9601 | 894 | 28 | 886 | 17 | 14 | 82.3529 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 91.6782 | 96.9631 | 86.9396 | 76.4300 | 894 | 28 | 892 | 134 | 128 | 95.5224 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.9893 | 96.9635 | 99.0370 | 71.9042 | 15104 | 473 | 15118 | 147 | 133 | 90.4762 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 91.8091 | 96.9639 | 87.1747 | 63.5912 | 511 | 16 | 1407 | 207 | 89 | 42.9952 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 95.5262 | 96.9639 | 94.1304 | 83.3091 | 511 | 16 | 433 | 27 | 27 | 100.0000 | |
| gduggal-bwavard | SNP | * | HG002complexvar | homalt | 98.4291 | 96.9651 | 99.9379 | 18.6318 | 279817 | 8758 | 270523 | 168 | 110 | 65.4762 | |
| mlin-fermikit | INDEL | D1_5 | segdup | het | 97.3152 | 96.9653 | 97.6676 | 91.5120 | 671 | 21 | 670 | 16 | 13 | 81.2500 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m1_e0 | * | 98.0946 | 96.9669 | 99.2488 | 83.4909 | 1055 | 33 | 1057 | 8 | 1 | 12.5000 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.8834 | 96.9671 | 96.7998 | 38.7932 | 4476 | 140 | 4507 | 149 | 76 | 51.0067 | |
| asubramanian-gatk | SNP | * | HG002compoundhet | homalt | 98.0307 | 96.9672 | 99.1179 | 35.4971 | 10455 | 327 | 10450 | 93 | 5 | 5.3763 | |
| gduggal-snapvard | SNP | * | HG002complexvar | het | 97.7612 | 96.9682 | 98.5672 | 22.3358 | 451386 | 14113 | 439324 | 6386 | 2268 | 35.5152 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 88.9611 | 96.9686 | 82.1752 | 61.2865 | 2719 | 85 | 2720 | 590 | 583 | 98.8136 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 91.2274 | 96.9697 | 86.1272 | 74.9275 | 448 | 14 | 447 | 72 | 72 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m2_e0 | het | 97.7099 | 96.9697 | 98.4615 | 96.4364 | 64 | 2 | 64 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m2_e1 | het | 97.7099 | 96.9697 | 98.4615 | 96.5608 | 64 | 2 | 64 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | tech_badpromoters | het | 91.4286 | 96.9697 | 86.4865 | 51.9481 | 32 | 1 | 32 | 5 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | tech_badpromoters | homalt | 98.4615 | 96.9697 | 100.0000 | 60.4938 | 32 | 1 | 32 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | tech_badpromoters | homalt | 98.4615 | 96.9697 | 100.0000 | 60.9756 | 32 | 1 | 32 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | tech_badpromoters | het | 94.1176 | 96.9697 | 91.4286 | 54.5455 | 32 | 1 | 32 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | tech_badpromoters | homalt | 96.8718 | 96.9697 | 96.7742 | 55.7143 | 32 | 1 | 30 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m0_e0 | het | 92.7536 | 96.9697 | 88.8889 | 96.6038 | 32 | 1 | 32 | 4 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 48.3871 | 32 | 1 | 32 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e0 | het | 96.7603 | 96.9697 | 96.5517 | 94.2829 | 64 | 2 | 112 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e1 | het | 96.7603 | 96.9697 | 96.5517 | 94.4391 | 64 | 2 | 112 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | D1_5 | map_l250_m0_e0 | het | 92.7536 | 96.9697 | 88.8889 | 96.9543 | 32 | 1 | 32 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 42.8571 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m1_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 85.9649 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m2_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 87.5486 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m2_e1 | homalt | 98.4615 | 96.9697 | 100.0000 | 87.8788 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 40.7407 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.4615 | 96.9697 | 100.0000 | 80.1527 | 128 | 4 | 130 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 41.8182 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m1_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 86.9919 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m2_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 88.3212 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m2_e1 | homalt | 98.4615 | 96.9697 | 100.0000 | 88.6121 | 32 | 1 | 32 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l100_m1_e0 | homalt | 96.9697 | 96.9697 | 96.9697 | 85.2018 | 32 | 1 | 32 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e0 | homalt | 96.9697 | 96.9697 | 96.9697 | 86.8000 | 32 | 1 | 32 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e1 | homalt | 96.9697 | 96.9697 | 96.9697 | 86.9565 | 32 | 1 | 32 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | tv | tech_badpromoters | het | 95.5224 | 96.9697 | 94.1176 | 64.2105 | 32 | 1 | 32 | 2 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | tech_badpromoters | het | 73.5632 | 96.9697 | 59.2593 | 50.0000 | 32 | 1 | 32 | 22 | 0 | 0.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.0901 | 96.9697 | 99.2366 | 79.4349 | 128 | 4 | 130 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.9223 | 96.9697 | 96.8750 | 89.3864 | 64 | 2 | 62 | 2 | 0 | 0.0000 | |