PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
60851-60900 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | D6_15 | func_cds | het | 91.8033 | 96.5517 | 87.5000 | 57.8947 | 28 | 1 | 28 | 4 | 4 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l125_m0_e0 | het | 86.1538 | 96.5517 | 77.7778 | 95.0549 | 28 | 1 | 28 | 8 | 8 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | segdup | * | 94.9153 | 96.5517 | 93.3333 | 95.3811 | 56 | 2 | 56 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m0_e0 | het | 98.2456 | 96.5517 | 100.0000 | 90.8497 | 28 | 1 | 28 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 87.3874 | 28 | 1 | 28 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | map_l100_m1_e0 | hetalt | 94.9153 | 96.5517 | 93.3333 | 84.4560 | 28 | 1 | 28 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.5517 | 96.5517 | 96.5517 | 80.4494 | 84 | 3 | 84 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | func_cds | het | 98.2456 | 96.5517 | 100.0000 | 43.3962 | 28 | 1 | 30 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l125_m0_e0 | het | 95.7044 | 96.5517 | 94.8718 | 91.7021 | 28 | 1 | 37 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | segdup | * | 91.0569 | 96.5517 | 86.1538 | 96.9253 | 56 | 2 | 56 | 9 | 2 | 22.2222 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m0_e0 | het | 93.3333 | 96.5517 | 90.3226 | 95.5840 | 28 | 1 | 28 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 90.0356 | 28 | 1 | 28 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l125_m0_e0 | het | 93.3333 | 96.5517 | 90.3226 | 93.7500 | 28 | 1 | 28 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l100_m2_e0 | * | 96.9697 | 96.5517 | 97.3913 | 88.8023 | 112 | 4 | 112 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l100_m2_e1 | * | 96.9697 | 96.5517 | 97.3913 | 89.0580 | 112 | 4 | 112 | 3 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 79.1047 | 96.5517 | 66.9981 | 74.4486 | 3136 | 112 | 3167 | 1560 | 81 | 5.1923 | |
| ckim-dragen | INDEL | * | map_l250_m2_e1 | homalt | 96.5517 | 96.5517 | 96.5517 | 95.0491 | 112 | 4 | 112 | 4 | 4 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | func_cds | het | 98.2456 | 96.5517 | 100.0000 | 54.8387 | 28 | 1 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | segdup | * | 96.5517 | 96.5517 | 96.5517 | 91.9332 | 56 | 2 | 56 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.5569 | 96.5517 | 94.5824 | 66.8413 | 420 | 15 | 419 | 24 | 1 | 4.1667 | |
| ltrigg-rtg2 | INDEL | D6_15 | func_cds | het | 98.2456 | 96.5517 | 100.0000 | 44.0000 | 28 | 1 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 82.4675 | 28 | 1 | 27 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | segdup | * | 94.1176 | 96.5517 | 91.8033 | 97.0113 | 56 | 2 | 56 | 5 | 2 | 40.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m0_e0 | het | 94.9153 | 96.5517 | 93.3333 | 95.6459 | 28 | 1 | 28 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 89.7810 | 28 | 1 | 28 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l250_m2_e1 | homalt | 97.3913 | 96.5517 | 98.2456 | 95.5277 | 112 | 4 | 112 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 92.8205 | 112 | 4 | 112 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.2456 | 96.5517 | 100.0000 | 71.8750 | 84 | 3 | 81 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | func_cds | het | 98.2456 | 96.5517 | 100.0000 | 41.6667 | 28 | 1 | 28 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 86.2944 | 28 | 1 | 27 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.2106 | 96.5536 | 99.9255 | 53.9316 | 10702 | 382 | 10737 | 8 | 3 | 37.5000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.1803 | 96.5537 | 97.8151 | 57.7486 | 17062 | 609 | 17057 | 381 | 365 | 95.8005 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.1803 | 96.5537 | 97.8151 | 57.7486 | 17062 | 609 | 17057 | 381 | 365 | 95.8005 | |
| jli-custom | SNP | * | map_l250_m2_e0 | het | 97.7202 | 96.5537 | 98.9152 | 87.0848 | 5015 | 179 | 5015 | 55 | 24 | 43.6364 | |
| ltrigg-rtg2 | INDEL | D1_5 | * | hetalt | 97.9310 | 96.5544 | 99.3475 | 70.1886 | 9892 | 353 | 10049 | 66 | 65 | 98.4848 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.6279 | 96.5566 | 98.7231 | 49.8328 | 35332 | 1260 | 35256 | 456 | 427 | 93.6404 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.0742 | 96.5582 | 99.6386 | 56.1134 | 30327 | 1081 | 30328 | 110 | 94 | 85.4545 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.0742 | 96.5582 | 99.6386 | 56.1134 | 30327 | 1081 | 30328 | 110 | 94 | 85.4545 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e1 | * | 97.8909 | 96.5591 | 99.2598 | 80.3577 | 1347 | 48 | 1341 | 10 | 3 | 30.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.8944 | 96.5596 | 99.2665 | 83.6203 | 421 | 15 | 406 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.5416 | 96.5596 | 98.5437 | 84.5866 | 421 | 15 | 406 | 6 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.0751 | 96.5596 | 97.5962 | 85.4240 | 421 | 15 | 406 | 10 | 6 | 60.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.4245 | 96.5596 | 98.3051 | 85.6945 | 421 | 15 | 406 | 7 | 5 | 71.4286 | |
| jpowers-varprowl | SNP | ti | map_l150_m1_e0 | * | 97.2860 | 96.5605 | 98.0225 | 78.7128 | 19034 | 678 | 19034 | 384 | 140 | 36.4583 | |
| raldana-dualsentieon | INDEL | I6_15 | HG002complexvar | het | 98.1424 | 96.5605 | 99.7771 | 58.4090 | 2274 | 81 | 2238 | 5 | 4 | 80.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.0853 | 96.5607 | 99.6588 | 36.0406 | 23696 | 844 | 23662 | 81 | 58 | 71.6049 | |
| gduggal-snapvard | SNP | ti | map_l125_m2_e0 | het | 91.7410 | 96.5618 | 87.3786 | 82.2821 | 18227 | 649 | 18090 | 2613 | 206 | 7.8837 | |
| raldana-dualsentieon | INDEL | * | map_l150_m1_e0 | * | 97.2191 | 96.5620 | 97.8852 | 87.7089 | 1292 | 46 | 1296 | 28 | 4 | 14.2857 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 83.8170 | 96.5624 | 74.0438 | 56.3581 | 3736 | 133 | 4259 | 1493 | 1471 | 98.5265 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 95.7432 | 96.5626 | 94.9376 | 45.0963 | 11040 | 393 | 11177 | 596 | 251 | 42.1141 | |