PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59101-59150 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.5520 | 95.8237 | 99.3437 | 50.3216 | 16933 | 738 | 16803 | 111 | 74 | 66.6667 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.4419 | 95.8245 | 95.0624 | 80.9574 | 10350 | 451 | 10358 | 538 | 336 | 62.4535 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 95.2485 | 95.8254 | 94.6785 | 79.7485 | 505 | 22 | 427 | 24 | 23 | 95.8333 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.8185 | 95.8304 | 99.8909 | 57.5027 | 5493 | 239 | 5494 | 6 | 4 | 66.6667 | |
| jpowers-varprowl | SNP | ti | map_l150_m2_e0 | het | 96.4300 | 95.8311 | 97.0364 | 82.0218 | 12344 | 537 | 12344 | 377 | 130 | 34.4828 | |
| cchapple-custom | SNP | * | map_l150_m0_e0 | het | 94.9871 | 95.8312 | 94.1577 | 84.6817 | 7609 | 331 | 7607 | 472 | 119 | 25.2119 | |
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.8461 | 95.8323 | 99.9464 | 57.4072 | 3725 | 162 | 3727 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m2_e0 | het | 88.9670 | 95.8333 | 83.0189 | 96.8187 | 46 | 2 | 44 | 9 | 4 | 44.4444 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.7037 | 95.8333 | 91.6667 | 76.2376 | 23 | 1 | 22 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 90.6883 | 23 | 1 | 23 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.7037 | 95.8333 | 91.6667 | 76.6990 | 23 | 1 | 22 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I1_5 | segdup | hetalt | 97.8723 | 95.8333 | 100.0000 | 96.0963 | 46 | 2 | 47 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.8406 | 95.8333 | 99.9338 | 44.4975 | 2990 | 130 | 3019 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 85.0896 | 95.8333 | 76.5120 | 54.1586 | 552 | 24 | 544 | 167 | 161 | 96.4072 | |
| ckim-vqsr | INDEL | I16_PLUS | segdup | het | 97.8723 | 95.8333 | 100.0000 | 97.1429 | 23 | 1 | 23 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l125_m0_e0 | het | 95.5844 | 95.8333 | 95.3368 | 94.0906 | 184 | 8 | 184 | 9 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_siren | hetalt | 97.8723 | 95.8333 | 100.0000 | 76.6892 | 69 | 3 | 69 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | segdup | het | 94.1851 | 95.8333 | 92.5926 | 93.6620 | 23 | 1 | 25 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_siren | hetalt | 97.8723 | 95.8333 | 100.0000 | 78.5047 | 69 | 3 | 69 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.2823 | 95.8333 | 98.7758 | 84.0415 | 1242 | 54 | 1291 | 16 | 13 | 81.2500 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.4748 | 95.8333 | 99.1736 | 75.2556 | 161 | 7 | 360 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | I1_5 | segdup | hetalt | 0.0000 | 95.8333 | 0.0000 | 0.0000 | 46 | 2 | 0 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | het | 88.0766 | 95.8333 | 81.4815 | 96.7606 | 46 | 2 | 44 | 10 | 4 | 40.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.7037 | 95.8333 | 91.6667 | 76.2376 | 23 | 1 | 22 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 90.6883 | 23 | 1 | 23 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l100_m2_e0 | * | 95.6522 | 95.8333 | 95.4717 | 89.6927 | 253 | 11 | 253 | 12 | 2 | 16.6667 | |
| ckim-gatk | INDEL | I16_PLUS | segdup | het | 97.8723 | 95.8333 | 100.0000 | 97.1429 | 23 | 1 | 23 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.9933 | 95.8333 | 96.1538 | 80.5097 | 276 | 12 | 250 | 10 | 7 | 70.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l250_m0_e0 | * | 92.0000 | 95.8333 | 88.4615 | 97.8862 | 23 | 1 | 23 | 3 | 1 | 33.3333 | |
| ckim-dragen | SNP | tv | tech_badpromoters | * | 97.1831 | 95.8333 | 98.5714 | 45.3125 | 69 | 3 | 69 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | map_siren | hetalt | 97.8723 | 95.8333 | 100.0000 | 76.6892 | 69 | 3 | 69 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | HG002compoundhet | homalt | 84.6862 | 95.8333 | 75.8621 | 56.0606 | 23 | 1 | 22 | 7 | 7 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m0_e0 | homalt | 95.7427 | 95.8333 | 95.6522 | 81.8898 | 23 | 1 | 22 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.7037 | 95.8333 | 91.6667 | 77.1429 | 23 | 1 | 22 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 90.3361 | 23 | 1 | 23 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | segdup | het | 95.8333 | 95.8333 | 95.8333 | 97.2125 | 23 | 1 | 23 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m0_e0 | homalt | 95.7427 | 95.8333 | 95.6522 | 86.4706 | 23 | 1 | 22 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | het | 88.9670 | 95.8333 | 83.0189 | 96.5762 | 46 | 2 | 44 | 9 | 4 | 44.4444 | |
| mlin-fermikit | INDEL | I16_PLUS | segdup | het | 95.9166 | 95.8333 | 96.0000 | 94.4196 | 23 | 1 | 24 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 75.4098 | 95.8333 | 62.1622 | 79.5580 | 23 | 1 | 23 | 14 | 14 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | HG002compoundhet | homalt | 15.8393 | 95.8333 | 8.6331 | 43.0328 | 23 | 1 | 24 | 254 | 199 | 78.3465 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 95.8333 | 95.8333 | 95.8333 | 44.3478 | 184 | 8 | 184 | 8 | 6 | 75.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 95.8333 | 95.8333 | 95.8333 | 71.7647 | 23 | 1 | 23 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 88.3249 | 23 | 1 | 23 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | func_cds | het | 97.8723 | 95.8333 | 100.0000 | 37.8378 | 23 | 1 | 23 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 86.7925 | 95.8333 | 79.3103 | 78.0303 | 23 | 1 | 23 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 97.8723 | 95.8333 | 100.0000 | 92.3205 | 46 | 2 | 46 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | HG002compoundhet | homalt | 83.6364 | 95.8333 | 74.1935 | 78.9116 | 23 | 1 | 23 | 8 | 7 | 87.5000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 91.0853 | 23 | 1 | 23 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.8723 | 95.8333 | 100.0000 | 86.3095 | 23 | 1 | 23 | 0 | 0 | ||