PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58501-58550 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D16_PLUS | HG002compoundhet | het | 91.9260 | 95.5556 | 88.5621 | 57.3816 | 387 | 18 | 271 | 35 | 34 | 97.1429 | |
| jli-custom | INDEL | I6_15 | segdup | hetalt | 97.7273 | 95.5556 | 100.0000 | 90.0693 | 43 | 2 | 43 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | segdup | hetalt | 97.7273 | 95.5556 | 100.0000 | 90.1376 | 43 | 2 | 43 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_siren | homalt | 96.6164 | 95.5556 | 97.7011 | 77.5194 | 86 | 4 | 85 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | segdup | hetalt | 97.7273 | 95.5556 | 100.0000 | 89.5377 | 43 | 2 | 43 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | segdup | hetalt | 97.7273 | 95.5556 | 100.0000 | 89.5377 | 43 | 2 | 43 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.7273 | 95.5556 | 100.0000 | 56.5657 | 43 | 2 | 43 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 97.7273 | 95.5556 | 100.0000 | 89.6135 | 43 | 2 | 43 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m2_e0 | homalt | 96.6292 | 95.5556 | 97.7273 | 94.5342 | 43 | 2 | 43 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 95.5556 | 95.5556 | 95.5556 | 77.2727 | 43 | 2 | 43 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 93.4783 | 95.5556 | 91.4894 | 52.5253 | 43 | 2 | 43 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | HG002compoundhet | het | 84.4943 | 95.5556 | 75.7282 | 32.4836 | 387 | 18 | 2106 | 675 | 234 | 34.6667 | |
| ndellapenna-hhga | INDEL | I6_15 | map_siren | homalt | 96.6292 | 95.5556 | 97.7273 | 81.5514 | 86 | 4 | 86 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l250_m0_e0 | * | 97.2074 | 95.5556 | 98.9175 | 91.4259 | 731 | 34 | 731 | 8 | 4 | 50.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 97.7273 | 95.5556 | 100.0000 | 88.3152 | 43 | 2 | 43 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 97.7273 | 95.5556 | 100.0000 | 89.3827 | 43 | 2 | 43 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 95.7366 | 95.5556 | 95.9184 | 83.9869 | 43 | 2 | 47 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 96.6292 | 95.5556 | 97.7273 | 90.1345 | 43 | 2 | 43 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | segdup | hetalt | 97.7273 | 95.5556 | 100.0000 | 90.1149 | 43 | 2 | 43 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 93.2809 | 95.5574 | 91.1103 | 49.1422 | 8023 | 373 | 7779 | 759 | 657 | 86.5613 | |
| jli-custom | INDEL | D16_PLUS | HG002compoundhet | * | 96.5889 | 95.5575 | 97.6430 | 32.3191 | 2237 | 104 | 2237 | 54 | 53 | 98.1481 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.4659 | 95.5595 | 91.4621 | 42.7719 | 11965 | 556 | 34730 | 3242 | 2192 | 67.6126 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m1_e0 | homalt | 97.3420 | 95.5598 | 99.1919 | 72.4388 | 495 | 23 | 491 | 4 | 2 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.1945 | 95.5607 | 98.8851 | 56.8401 | 3724 | 173 | 3725 | 42 | 35 | 83.3333 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.7416 | 95.5607 | 95.9231 | 39.1360 | 4542 | 211 | 4541 | 193 | 74 | 38.3420 | |
| ciseli-custom | SNP | tv | HG002complexvar | het | 94.7007 | 95.5637 | 93.8531 | 24.0959 | 144047 | 6687 | 143323 | 9387 | 273 | 2.9083 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.5317 | 95.5639 | 99.5821 | 76.9923 | 4050 | 188 | 4051 | 17 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e1 | homalt | 97.5265 | 95.5645 | 99.5708 | 84.1389 | 237 | 11 | 232 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m0_e0 | * | 95.1860 | 95.5645 | 94.8104 | 87.9856 | 474 | 22 | 475 | 26 | 7 | 26.9231 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m0_e0 | * | 97.4313 | 95.5645 | 99.3724 | 79.4409 | 474 | 22 | 475 | 3 | 1 | 33.3333 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m0_e0 | * | 85.0206 | 95.5645 | 76.5721 | 89.6278 | 474 | 22 | 621 | 190 | 41 | 21.5789 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m0_e0 | * | 97.6140 | 95.5678 | 99.7497 | 64.5964 | 3989 | 185 | 3986 | 10 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m2_e0 | * | 93.8505 | 95.5684 | 92.1933 | 92.5267 | 496 | 23 | 496 | 42 | 11 | 26.1905 | |
| gduggal-bwavard | INDEL | I1_5 | map_l150_m2_e0 | * | 93.9848 | 95.5684 | 92.4528 | 91.6272 | 496 | 23 | 490 | 40 | 14 | 35.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m2_e0 | * | 96.5943 | 95.5684 | 97.6424 | 93.2903 | 496 | 23 | 497 | 12 | 2 | 16.6667 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.7098 | 95.5696 | 97.8776 | 67.1394 | 5587 | 259 | 5534 | 120 | 110 | 91.6667 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.7098 | 95.5696 | 97.8776 | 67.1394 | 5587 | 259 | 5534 | 120 | 110 | 91.6667 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.4204 | 95.5696 | 99.3443 | 73.5702 | 302 | 14 | 303 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 94.8382 | 95.5706 | 94.1169 | 36.5552 | 1273 | 59 | 7679 | 480 | 470 | 97.9167 | |
| gduggal-snapvard | INDEL | * | map_l125_m0_e0 | het | 81.4896 | 95.5707 | 71.0250 | 91.1456 | 561 | 26 | 880 | 359 | 93 | 25.9053 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 95.5708 | 0.0000 | 0.0000 | 2093 | 97 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.3750 | 95.5710 | 99.2485 | 52.6679 | 6603 | 306 | 6603 | 50 | 45 | 90.0000 | |
| eyeh-varpipe | INDEL | * | * | het | 96.2526 | 95.5711 | 96.9439 | 53.1169 | 185535 | 8598 | 184936 | 5830 | 5344 | 91.6638 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 96.1875 | 95.5720 | 96.8111 | 79.9607 | 1295 | 60 | 1184 | 39 | 25 | 64.1026 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.2521 | 95.5720 | 98.9924 | 51.2038 | 2849 | 132 | 2849 | 29 | 29 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l250_m2_e1 | het | 97.3057 | 95.5725 | 99.1029 | 86.9625 | 1878 | 87 | 1878 | 17 | 8 | 47.0588 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 96.9916 | 95.5731 | 98.4528 | 83.7652 | 1209 | 56 | 1209 | 19 | 11 | 57.8947 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e0 | het | 95.7357 | 95.5734 | 95.8984 | 87.7950 | 475 | 22 | 491 | 21 | 5 | 23.8095 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m2_e0 | het | 97.2343 | 95.5734 | 98.9540 | 80.5770 | 475 | 22 | 473 | 5 | 0 | 0.0000 | |
| ckim-isaac | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.6487 | 95.5751 | 99.8142 | 40.4145 | 9655 | 447 | 9670 | 18 | 11 | 61.1111 | |