PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57951-58000 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D6_15 | segdup | * | 96.8085 | 95.2880 | 98.3784 | 93.0582 | 182 | 9 | 182 | 3 | 3 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | segdup | * | 92.8571 | 95.2880 | 90.5473 | 94.7561 | 182 | 9 | 182 | 19 | 5 | 26.3158 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 35.0458 | 95.2883 | 21.4714 | 85.0675 | 1355 | 67 | 1398 | 5113 | 85 | 1.6624 | |
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 82.5113 | 95.2894 | 72.7551 | 82.9109 | 3095 | 153 | 3095 | 1159 | 30 | 2.5884 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.7120 | 95.2896 | 98.1776 | 52.4952 | 5462 | 270 | 7542 | 140 | 133 | 95.0000 | |
| gduggal-bwafb | INDEL | * | map_l150_m1_e0 | * | 96.3775 | 95.2915 | 97.4886 | 88.7239 | 1275 | 63 | 1281 | 33 | 7 | 21.2121 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m2_e0 | homalt | 97.2112 | 95.2919 | 99.2095 | 74.5984 | 506 | 25 | 502 | 4 | 2 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l150_m2_e1 | * | 93.8347 | 95.2919 | 92.4214 | 91.6756 | 506 | 25 | 500 | 41 | 15 | 36.5854 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m2_e1 | * | 96.8450 | 95.2919 | 98.4496 | 90.8802 | 506 | 25 | 508 | 8 | 2 | 25.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.9392 | 95.2922 | 98.6441 | 64.3073 | 587 | 29 | 582 | 8 | 8 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.8585 | 95.2922 | 98.4772 | 64.0511 | 587 | 29 | 582 | 9 | 9 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.6173 | 95.2922 | 97.9798 | 63.9563 | 587 | 29 | 582 | 12 | 11 | 91.6667 | |
| jpowers-varprowl | SNP | ti | map_l150_m0_e0 | * | 96.1494 | 95.2932 | 97.0211 | 84.0052 | 7491 | 370 | 7491 | 230 | 86 | 37.3913 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m0_e0 | homalt | 97.0060 | 95.2941 | 98.7805 | 84.6154 | 81 | 4 | 81 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.5904 | 95.2941 | 100.0000 | 62.7193 | 81 | 4 | 85 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.5904 | 95.2941 | 100.0000 | 57.0681 | 81 | 4 | 82 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e1 | * | 96.4286 | 95.2941 | 97.5904 | 93.1800 | 81 | 4 | 81 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.5904 | 95.2941 | 100.0000 | 52.8736 | 81 | 4 | 82 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m2_e1 | * | 97.5904 | 95.2941 | 100.0000 | 89.8113 | 81 | 4 | 81 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.5904 | 95.2941 | 100.0000 | 52.8736 | 81 | 4 | 82 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | HG002complexvar | homalt | 89.0670 | 95.2951 | 83.6029 | 66.2028 | 1114 | 55 | 1137 | 223 | 214 | 95.9641 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.4450 | 95.2959 | 99.6933 | 71.1249 | 628 | 31 | 650 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.4450 | 95.2959 | 99.6933 | 71.1249 | 628 | 31 | 650 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 91.5762 | 95.2963 | 88.1356 | 47.4691 | 3120 | 154 | 2808 | 378 | 341 | 90.2116 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.7578 | 95.2969 | 96.2233 | 58.1854 | 4093 | 202 | 4102 | 161 | 85 | 52.7950 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 94.8642 | 95.2989 | 94.4335 | 80.6105 | 13886 | 685 | 13911 | 820 | 85 | 10.3659 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 94.8642 | 95.2989 | 94.4335 | 80.6105 | 13886 | 685 | 13911 | 820 | 85 | 10.3659 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.4762 | 95.2989 | 97.6829 | 51.6687 | 21204 | 1046 | 21205 | 503 | 474 | 94.2346 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.5788 | 95.2991 | 95.8600 | 66.1112 | 4237 | 209 | 4191 | 181 | 178 | 98.3425 | |
| ndellapenna-hhga | SNP | tv | map_l250_m1_e0 | het | 97.1755 | 95.2994 | 99.1269 | 86.3845 | 1703 | 84 | 1703 | 15 | 8 | 53.3333 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 97.2360 | 95.2999 | 99.2524 | 31.1832 | 1541 | 76 | 1726 | 13 | 13 | 100.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.6750 | 95.3003 | 96.0526 | 80.5028 | 365 | 18 | 365 | 15 | 12 | 80.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m1_e0 | * | 94.6449 | 95.3012 | 93.9976 | 87.8589 | 791 | 39 | 783 | 50 | 20 | 40.0000 | |
| ckim-gatk | INDEL | D16_PLUS | HG002compoundhet | * | 95.5256 | 95.3012 | 95.7511 | 35.3496 | 2231 | 110 | 2231 | 99 | 96 | 96.9697 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e1 | * | 94.8302 | 95.3018 | 94.3633 | 90.2818 | 2779 | 137 | 2779 | 166 | 55 | 33.1325 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.7690 | 95.3020 | 96.2406 | 77.7219 | 142 | 7 | 128 | 5 | 3 | 60.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.1286 | 95.3020 | 96.9697 | 78.0731 | 142 | 7 | 128 | 4 | 2 | 50.0000 | |
| mlin-fermikit | INDEL | I1_5 | HG002complexvar | * | 96.3771 | 95.3032 | 97.4754 | 51.5661 | 31796 | 1567 | 31622 | 819 | 800 | 97.6801 | |
| ltrigg-rtg1 | INDEL | I1_5 | HG002complexvar | hetalt | 97.3210 | 95.3071 | 99.4220 | 76.8604 | 1645 | 81 | 1892 | 11 | 11 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | map_l150_m0_e0 | het | 96.5886 | 95.3079 | 97.9042 | 90.5060 | 325 | 16 | 327 | 7 | 1 | 14.2857 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m2_e0 | homalt | 97.1572 | 95.3079 | 99.0798 | 78.1940 | 325 | 16 | 323 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.3694 | 95.3108 | 99.5190 | 31.4561 | 5183 | 255 | 5172 | 25 | 25 | 100.0000 | |
| jli-custom | INDEL | D1_5 | HG002compoundhet | hetalt | 97.3992 | 95.3113 | 99.5807 | 60.0898 | 9737 | 479 | 9737 | 41 | 40 | 97.5610 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m1_e0 | het | 89.7059 | 95.3125 | 84.7222 | 93.7984 | 61 | 3 | 61 | 11 | 1 | 9.0909 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e1 | * | 97.6000 | 95.3125 | 100.0000 | 89.3263 | 122 | 6 | 122 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m1_e0 | homalt | 97.6000 | 95.3125 | 100.0000 | 84.6348 | 61 | 3 | 61 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.2339 | 95.3125 | 99.2344 | 58.7664 | 1708 | 84 | 1685 | 13 | 10 | 76.9231 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m1_e0 | homalt | 96.7994 | 95.3125 | 98.3333 | 81.0726 | 61 | 3 | 59 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | * | map_l150_m0_e0 | * | 95.7982 | 95.3125 | 96.2888 | 84.7317 | 11468 | 564 | 11468 | 442 | 141 | 31.9005 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m1_e0 | homalt | 96.7994 | 95.3125 | 98.3333 | 76.8340 | 61 | 3 | 59 | 1 | 0 | 0.0000 | |