PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57601-57650 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 96.2963 | 95.1220 | 97.5000 | 93.0314 | 39 | 2 | 39 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.5000 | 95.1220 | 100.0000 | 91.9255 | 39 | 2 | 39 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 95.1220 | 95.1220 | 95.1220 | 93.7785 | 39 | 2 | 39 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.5000 | 95.1220 | 100.0000 | 91.6488 | 39 | 2 | 39 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.6364 | 95.1220 | 82.9787 | 75.1323 | 78 | 4 | 78 | 16 | 16 | 100.0000 | |
| jlack-gatk | SNP | * | map_l100_m1_e0 | hetalt | 93.9759 | 95.1220 | 92.8571 | 84.6154 | 39 | 2 | 39 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.5000 | 95.1220 | 100.0000 | 91.6844 | 39 | 2 | 39 | 0 | 0 | ||
| jlack-gatk | SNP | tv | map_l100_m1_e0 | hetalt | 93.9759 | 95.1220 | 92.8571 | 84.6154 | 39 | 2 | 39 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m2_e0 | * | 95.2619 | 95.1220 | 95.4023 | 90.4185 | 78 | 4 | 83 | 4 | 2 | 50.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 89.6552 | 95.1220 | 84.7826 | 76.1039 | 78 | 4 | 78 | 14 | 14 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.1356 | 95.1220 | 82.1053 | 75.7653 | 78 | 4 | 78 | 17 | 17 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.5000 | 95.1220 | 100.0000 | 91.0112 | 39 | 2 | 48 | 0 | 0 | ||
| ciseli-custom | SNP | ti | tech_badpromoters | homalt | 95.0609 | 95.1220 | 95.0000 | 49.3671 | 39 | 2 | 38 | 2 | 1 | 50.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e1 | homalt | 96.3955 | 95.1220 | 97.7035 | 92.1035 | 468 | 24 | 468 | 11 | 8 | 72.7273 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 91.7647 | 95.1220 | 88.6364 | 91.7448 | 39 | 2 | 39 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | SNP | * | map_l100_m1_e0 | hetalt | 93.9759 | 95.1220 | 92.8571 | 85.7627 | 39 | 2 | 39 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l100_m1_e0 | hetalt | 93.9759 | 95.1220 | 92.8571 | 85.7627 | 39 | 2 | 39 | 3 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 83.8710 | 95.1220 | 75.0000 | 93.0667 | 39 | 2 | 39 | 13 | 10 | 76.9231 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 89.1429 | 95.1220 | 83.8710 | 75.9067 | 78 | 4 | 78 | 15 | 15 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.6364 | 95.1220 | 82.9787 | 75.7106 | 78 | 4 | 78 | 16 | 16 | 100.0000 | |
| bgallagher-sentieon | SNP | * | map_l100_m1_e0 | hetalt | 97.5000 | 95.1220 | 100.0000 | 70.4545 | 39 | 2 | 39 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l100_m1_e0 | hetalt | 97.5000 | 95.1220 | 100.0000 | 70.4545 | 39 | 2 | 39 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 91.1519 | 95.1220 | 87.5000 | 86.9767 | 39 | 2 | 49 | 7 | 6 | 85.7143 | |
| jpowers-varprowl | SNP | ti | map_l125_m0_e0 | het | 95.7486 | 95.1228 | 96.3826 | 81.5656 | 7860 | 403 | 7860 | 295 | 104 | 35.2542 | |
| gduggal-snapplat | SNP | * | map_l100_m2_e1 | het | 95.2787 | 95.1235 | 95.4344 | 81.1824 | 44611 | 2287 | 44649 | 2136 | 1068 | 50.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.4691 | 95.1249 | 97.8519 | 68.0089 | 5561 | 285 | 5512 | 121 | 112 | 92.5620 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.4691 | 95.1249 | 97.8519 | 68.0089 | 5561 | 285 | 5512 | 121 | 112 | 92.5620 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m1_e0 | * | 97.3892 | 95.1266 | 99.7620 | 81.0778 | 2518 | 129 | 2515 | 6 | 3 | 50.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.2779 | 95.1269 | 99.5285 | 62.9323 | 8843 | 453 | 8865 | 42 | 42 | 100.0000 | |
| astatham-gatk | INDEL | * | map_l125_m2_e0 | * | 96.5138 | 95.1275 | 97.9410 | 89.1008 | 2089 | 107 | 2093 | 44 | 9 | 20.4545 | |
| ckim-vqsr | SNP | * | HG002compoundhet | hetalt | 97.5030 | 95.1276 | 100.0000 | 23.3645 | 820 | 42 | 820 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | HG002compoundhet | hetalt | 97.5030 | 95.1276 | 100.0000 | 23.3645 | 820 | 42 | 820 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 96.5828 | 95.1281 | 98.0826 | 45.6725 | 5643 | 289 | 7622 | 149 | 142 | 95.3020 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.7357 | 95.1299 | 98.3966 | 42.6150 | 1172 | 60 | 1166 | 19 | 9 | 47.3684 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m1_e0 | * | 92.6870 | 95.1299 | 90.3665 | 86.2223 | 1758 | 90 | 1726 | 184 | 50 | 27.1739 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.2580 | 95.1314 | 99.4819 | 36.3636 | 1231 | 63 | 1344 | 7 | 7 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.9360 | 95.1324 | 98.8093 | 46.5673 | 13114 | 671 | 13112 | 158 | 151 | 95.5696 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 76.4238 | 95.1325 | 63.8642 | 77.1773 | 18626 | 953 | 18983 | 10741 | 319 | 2.9699 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 76.4238 | 95.1325 | 63.8642 | 77.1773 | 18626 | 953 | 18983 | 10741 | 319 | 2.9699 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 84.1187 | 95.1327 | 75.3903 | 72.1991 | 5805 | 297 | 5747 | 1876 | 1702 | 90.7249 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.9007 | 95.1331 | 98.7352 | 48.1982 | 1251 | 64 | 1249 | 16 | 11 | 68.7500 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.8631 | 95.1331 | 98.6572 | 48.4108 | 1251 | 64 | 1249 | 17 | 12 | 70.5882 | |
| cchapple-custom | SNP | * | map_l150_m0_e0 | homalt | 97.4937 | 95.1333 | 99.9743 | 71.2925 | 3890 | 199 | 3888 | 1 | 1 | 100.0000 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.5233 | 95.1335 | 95.9163 | 58.0490 | 2815 | 144 | 2842 | 121 | 62 | 51.2397 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m2_e1 | * | 97.2376 | 95.1351 | 99.4350 | 94.2157 | 176 | 9 | 176 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | HG002compoundhet | * | 96.3058 | 95.1360 | 97.5048 | 66.8717 | 11755 | 601 | 11762 | 301 | 300 | 99.6678 | |
| gduggal-bwafb | INDEL | * | map_l150_m0_e0 | * | 96.0765 | 95.1362 | 97.0356 | 91.6003 | 489 | 25 | 491 | 15 | 3 | 20.0000 | |
| gduggal-bwafb | INDEL | * | map_l100_m0_e0 | * | 96.4693 | 95.1376 | 97.8389 | 85.1430 | 1487 | 76 | 1494 | 33 | 7 | 21.2121 | |
| gduggal-snapfb | SNP | * | map_l100_m0_e0 | homalt | 97.2638 | 95.1377 | 99.4870 | 75.4317 | 11055 | 565 | 11055 | 57 | 21 | 36.8421 | |
| raldana-dualsentieon | INDEL | I16_PLUS | * | * | 96.7701 | 95.1388 | 98.4583 | 67.0904 | 6067 | 310 | 6067 | 95 | 85 | 89.4737 | |