PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57351-57400 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.0000 | 95.0000 | 95.0000 | 99.3932 | 19 | 1 | 19 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.4359 | 95.0000 | 100.0000 | 65.4545 | 19 | 1 | 19 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.4359 | 95.0000 | 100.0000 | 78.8104 | 57 | 3 | 57 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l125_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 92.6357 | 38 | 2 | 38 | 0 | 0 | ||
| ckim-dragen | SNP | * | map_l150_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 84.6774 | 19 | 1 | 19 | 0 | 0 | ||
| ckim-dragen | SNP | * | map_l150_m2_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 86.7133 | 19 | 1 | 19 | 0 | 0 | ||
| ckim-dragen | SNP | * | map_l150_m2_e1 | hetalt | 97.4359 | 95.0000 | 100.0000 | 86.7133 | 19 | 1 | 19 | 0 | 0 | ||
| ckim-dragen | SNP | tv | map_l150_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 84.6774 | 19 | 1 | 19 | 0 | 0 | ||
| ckim-dragen | SNP | tv | map_l150_m2_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 86.7133 | 19 | 1 | 19 | 0 | 0 | ||
| ckim-dragen | SNP | tv | map_l150_m2_e1 | hetalt | 97.4359 | 95.0000 | 100.0000 | 86.7133 | 19 | 1 | 19 | 0 | 0 | ||
| ckim-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.0000 | 95.0000 | 95.0000 | 99.3932 | 19 | 1 | 19 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m1_e0 | het | 89.5075 | 95.0000 | 84.6154 | 94.1704 | 19 | 1 | 22 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m2_e0 | het | 89.5075 | 95.0000 | 84.6154 | 94.9219 | 19 | 1 | 22 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m2_e1 | het | 89.5075 | 95.0000 | 84.6154 | 95.0570 | 19 | 1 | 22 | 4 | 0 | 0.0000 | |
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 97.4359 | 95.0000 | 100.0000 | 99.4237 | 19 | 1 | 19 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_l125_m1_e0 | het | 86.3636 | 95.0000 | 79.1667 | 97.2603 | 19 | 1 | 19 | 5 | 1 | 20.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l125_m2_e0 | het | 84.4444 | 95.0000 | 76.0000 | 97.5822 | 19 | 1 | 19 | 6 | 1 | 16.6667 | |
| ckim-dragen | INDEL | D16_PLUS | map_l125_m2_e1 | het | 82.6087 | 95.0000 | 73.0769 | 97.5495 | 19 | 1 | 19 | 7 | 2 | 28.5714 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.4359 | 95.0000 | 100.0000 | 65.4545 | 19 | 1 | 19 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.4359 | 95.0000 | 100.0000 | 78.8104 | 57 | 3 | 57 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m0_e0 | het | 94.9137 | 95.0000 | 94.8276 | 83.1884 | 57 | 3 | 55 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l150_m0_e0 | het | 97.4359 | 95.0000 | 100.0000 | 89.6739 | 19 | 1 | 19 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.2938 | 95.0000 | 99.7012 | 54.2527 | 2964 | 156 | 3003 | 9 | 8 | 88.8889 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m1_e0 | het | 94.8682 | 95.0000 | 94.7368 | 87.3333 | 19 | 1 | 18 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m2_e0 | het | 94.8682 | 95.0000 | 94.7368 | 89.2045 | 19 | 1 | 18 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m2_e1 | het | 94.8682 | 95.0000 | 94.7368 | 89.3258 | 19 | 1 | 18 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m2_e0 | homalt | 97.4359 | 95.0000 | 100.0000 | 91.4798 | 57 | 3 | 57 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m2_e1 | homalt | 97.4359 | 95.0000 | 100.0000 | 91.7151 | 57 | 3 | 57 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m0_e0 | het | 94.9137 | 95.0000 | 94.8276 | 84.1962 | 57 | 3 | 55 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.4359 | 95.0000 | 100.0000 | 51.2821 | 19 | 1 | 19 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | map_l250_m2_e0 | homalt | 95.0000 | 95.0000 | 95.0000 | 92.8401 | 57 | 3 | 57 | 3 | 1 | 33.3333 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m2_e1 | homalt | 95.0000 | 95.0000 | 95.0000 | 92.9988 | 57 | 3 | 57 | 3 | 1 | 33.3333 | |
| jpowers-varprowl | INDEL | D6_15 | map_l150_m0_e0 | het | 84.4444 | 95.0000 | 76.0000 | 93.9904 | 19 | 1 | 19 | 6 | 6 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.4359 | 95.0000 | 100.0000 | 67.2414 | 19 | 1 | 19 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.4291 | 95.0000 | 95.8621 | 89.7959 | 152 | 8 | 139 | 6 | 3 | 50.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.4359 | 95.0000 | 100.0000 | 78.6517 | 57 | 3 | 57 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 97.4359 | 95.0000 | 100.0000 | 86.1314 | 19 | 1 | 19 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m0_e0 | het | 95.4148 | 95.0000 | 95.8333 | 93.3148 | 19 | 1 | 23 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.4359 | 95.0000 | 100.0000 | 62.7451 | 19 | 1 | 19 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.4359 | 95.0000 | 100.0000 | 80.0000 | 19 | 1 | 7 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e0 | homalt | 97.4359 | 95.0000 | 100.0000 | 93.9937 | 57 | 3 | 57 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e1 | homalt | 97.4359 | 95.0000 | 100.0000 | 94.1418 | 57 | 3 | 57 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.1982 | 95.0000 | 91.4634 | 89.5261 | 684 | 36 | 750 | 70 | 22 | 31.4286 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m1_e0 | het | 92.6829 | 95.0000 | 90.4762 | 94.2308 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m2_e0 | het | 92.6829 | 95.0000 | 90.4762 | 95.1389 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m2_e1 | het | 92.6829 | 95.0000 | 90.4762 | 95.2381 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 92.6829 | 95.0000 | 90.4762 | 99.2519 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.0000 | 95.0000 | 95.0000 | 99.3115 | 19 | 1 | 19 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | map_l125_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 92.2131 | 38 | 2 | 38 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m1_e0 | het | 92.6829 | 95.0000 | 90.4762 | 95.0000 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |