PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57301-57350 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 95.1579 | 94.9718 | 95.3448 | 39.6821 | 3872 | 205 | 3871 | 189 | 179 | 94.7090 | |
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.2357 | 94.9731 | 99.6087 | 58.9389 | 14642 | 775 | 14763 | 58 | 58 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.2548 | 94.9731 | 99.6489 | 58.8526 | 14642 | 775 | 14759 | 52 | 52 | 100.0000 | |
| dgrover-gatk | INDEL | * | HG002compoundhet | * | 95.1627 | 94.9733 | 95.3528 | 63.3096 | 28454 | 1506 | 28336 | 1381 | 1370 | 99.2035 | |
| gduggal-snapfb | SNP | * | map_l150_m2_e0 | homalt | 97.2134 | 94.9739 | 99.5609 | 80.8017 | 11111 | 588 | 11111 | 49 | 20 | 40.8163 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 94.9746 | 0.0000 | 0.0000 | 1682 | 89 | 0 | 0 | 0 | ||
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.1839 | 94.9785 | 99.4942 | 28.3420 | 9949 | 526 | 10032 | 51 | 50 | 98.0392 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.3835 | 94.9801 | 99.9116 | 43.2609 | 3349 | 177 | 3390 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.3835 | 94.9801 | 99.9116 | 43.2609 | 3349 | 177 | 3390 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m1_e0 | het | 96.7920 | 94.9807 | 98.6737 | 82.4610 | 738 | 39 | 744 | 10 | 1 | 10.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m1_e0 | het | 97.2316 | 94.9807 | 99.5918 | 74.1652 | 738 | 39 | 732 | 3 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.2278 | 94.9810 | 97.5078 | 52.7941 | 1249 | 66 | 1252 | 32 | 24 | 75.0000 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 74.2906 | 94.9819 | 61.0017 | 81.9477 | 10259 | 542 | 10341 | 6611 | 313 | 4.7345 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 95.3085 | 94.9832 | 95.6360 | 75.7457 | 13840 | 731 | 13850 | 632 | 351 | 55.5380 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 95.3085 | 94.9832 | 95.6360 | 75.7457 | 13840 | 731 | 13850 | 632 | 351 | 55.5380 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m1_e0 | het | 94.8942 | 94.9833 | 94.8052 | 89.4916 | 284 | 15 | 292 | 16 | 2 | 12.5000 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 93.7394 | 94.9841 | 92.5270 | 73.6767 | 1193 | 63 | 1201 | 97 | 62 | 63.9175 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.4683 | 94.9844 | 97.9994 | 58.6524 | 3049 | 161 | 3037 | 62 | 60 | 96.7742 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 36.1705 | 94.9861 | 22.3385 | 27.7457 | 341 | 18 | 363 | 1262 | 1171 | 92.7892 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.8891 | 94.9885 | 98.8674 | 52.9255 | 3317 | 175 | 3317 | 38 | 38 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | HG002complexvar | het | 96.7518 | 94.9894 | 98.5809 | 56.5929 | 2237 | 118 | 2223 | 32 | 9 | 28.1250 | |
| gduggal-snapvard | INDEL | I1_5 | map_l150_m2_e0 | * | 89.7214 | 94.9904 | 85.0062 | 90.8896 | 493 | 26 | 686 | 121 | 44 | 36.3636 | |
| asubramanian-gatk | INDEL | * | map_siren | homalt | 97.0575 | 94.9906 | 99.2163 | 82.1825 | 2522 | 133 | 2532 | 20 | 9 | 45.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.2852 | 94.9924 | 99.6914 | 70.8502 | 626 | 33 | 646 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.2852 | 94.9924 | 99.6914 | 70.8502 | 626 | 33 | 646 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.1408 | 94.9941 | 99.3867 | 29.3238 | 6471 | 341 | 6482 | 40 | 39 | 97.5000 | |
| dgrover-gatk | INDEL | D6_15 | HG002compoundhet | hetalt | 97.2251 | 94.9945 | 99.5630 | 24.6392 | 7743 | 408 | 7747 | 34 | 33 | 97.0588 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e1 | * | 92.7581 | 94.9974 | 90.6219 | 86.9648 | 1842 | 97 | 1807 | 187 | 51 | 27.2727 | |
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e0 | homalt | 97.4359 | 95.0000 | 100.0000 | 92.9124 | 57 | 3 | 55 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e1 | homalt | 97.4359 | 95.0000 | 100.0000 | 93.0905 | 57 | 3 | 55 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | map_l250_m1_e0 | het | 84.2439 | 95.0000 | 75.6757 | 97.2253 | 57 | 3 | 56 | 18 | 4 | 22.2222 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m0_e0 | het | 95.6438 | 95.0000 | 96.2963 | 89.8496 | 19 | 1 | 26 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | * | map_l150_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 82.4074 | 19 | 1 | 19 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | map_l150_m2_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 83.8983 | 19 | 1 | 19 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | map_l150_m2_e1 | hetalt | 97.4359 | 95.0000 | 100.0000 | 84.0336 | 19 | 1 | 19 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l150_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 82.4074 | 19 | 1 | 19 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l150_m2_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 83.8983 | 19 | 1 | 19 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l150_m2_e1 | hetalt | 97.4359 | 95.0000 | 100.0000 | 84.0336 | 19 | 1 | 19 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | het | 92.6829 | 95.0000 | 90.4762 | 96.8563 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | het | 92.6829 | 95.0000 | 90.4762 | 97.3384 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | het | 92.6829 | 95.0000 | 90.4762 | 97.4074 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.0888 | 95.0000 | 97.2028 | 90.0070 | 152 | 8 | 139 | 4 | 3 | 75.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m0_e0 | het | 95.2267 | 95.0000 | 95.4545 | 93.3333 | 19 | 1 | 21 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.0000 | 95.0000 | 95.0000 | 62.2642 | 19 | 1 | 19 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | * | map_l150_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 76.8293 | 19 | 1 | 19 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l150_m2_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 80.8081 | 19 | 1 | 19 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l150_m2_e1 | hetalt | 97.4359 | 95.0000 | 100.0000 | 80.8081 | 19 | 1 | 19 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l150_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 76.8293 | 19 | 1 | 19 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l150_m2_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 80.8081 | 19 | 1 | 19 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l150_m2_e1 | hetalt | 97.4359 | 95.0000 | 100.0000 | 80.8081 | 19 | 1 | 19 | 0 | 0 | ||