PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56951-57000 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 94.7533 | 0.0000 | 0.0000 | 3341 | 185 | 0 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_siren | * | 96.6555 | 94.7541 | 98.6348 | 83.9364 | 289 | 16 | 289 | 4 | 4 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | map_l250_m1_e0 | * | 95.6954 | 94.7541 | 96.6555 | 94.7800 | 289 | 16 | 289 | 10 | 3 | 30.0000 | |
| ckim-vqsr | INDEL | * | map_l250_m1_e0 | * | 93.0757 | 94.7541 | 91.4557 | 97.2688 | 289 | 16 | 289 | 27 | 2 | 7.4074 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 82.4326 | 94.7547 | 72.9465 | 54.9486 | 1120 | 62 | 1119 | 415 | 412 | 99.2771 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.9736 | 94.7552 | 99.2982 | 55.3292 | 271 | 15 | 283 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.3002 | 94.7561 | 99.9846 | 24.3136 | 6469 | 358 | 6477 | 1 | 0 | 0.0000 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.7398 | 94.7570 | 98.8075 | 51.0833 | 1735 | 96 | 1740 | 21 | 1 | 4.7619 | |
| raldana-dualsentieon | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.1576 | 94.7581 | 99.6819 | 66.9239 | 940 | 52 | 940 | 3 | 1 | 33.3333 | |
| jpowers-varprowl | INDEL | D1_5 | map_l125_m0_e0 | * | 94.8537 | 94.7581 | 94.9495 | 88.5760 | 470 | 26 | 470 | 25 | 10 | 40.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | HG002compoundhet | * | 96.8842 | 94.7609 | 99.1047 | 63.0486 | 11594 | 641 | 11623 | 105 | 78 | 74.2857 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.0497 | 94.7611 | 99.4516 | 24.8186 | 4522 | 250 | 4534 | 25 | 25 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.1068 | 94.7612 | 99.5714 | 64.0076 | 8809 | 487 | 8828 | 38 | 38 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | * | * | 95.6258 | 94.7617 | 96.5059 | 56.5047 | 139058 | 7687 | 139038 | 5034 | 4747 | 94.2988 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 76.8434 | 94.7617 | 64.6239 | 86.6785 | 4016 | 222 | 3986 | 2182 | 61 | 2.7956 | |
| gduggal-snapvard | INDEL | * | map_l250_m2_e0 | het | 72.7145 | 94.7619 | 58.9899 | 96.0065 | 199 | 11 | 292 | 203 | 47 | 23.1527 | |
| ckim-dragen | INDEL | * | map_l250_m2_e0 | het | 92.7521 | 94.7619 | 90.8257 | 96.6436 | 199 | 11 | 198 | 20 | 2 | 10.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m2_e0 | het | 95.9036 | 94.7619 | 97.0732 | 95.8061 | 199 | 11 | 199 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | map_l250_m2_e0 | het | 93.8679 | 94.7619 | 92.9907 | 95.2339 | 199 | 11 | 199 | 15 | 1 | 6.6667 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.1310 | 94.7620 | 99.6215 | 40.8094 | 15830 | 875 | 16056 | 61 | 59 | 96.7213 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.1310 | 94.7620 | 99.6215 | 40.8094 | 15830 | 875 | 16056 | 61 | 59 | 96.7213 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m1_e0 | homalt | 97.1395 | 94.7635 | 99.6377 | 74.6207 | 561 | 31 | 550 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.0717 | 94.7636 | 99.4951 | 30.0679 | 7637 | 422 | 7685 | 39 | 38 | 97.4359 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.0717 | 94.7636 | 99.4951 | 30.0679 | 7637 | 422 | 7685 | 39 | 38 | 97.4359 | |
| hfeng-pmm3 | INDEL | D6_15 | segdup | * | 97.0509 | 94.7644 | 99.4505 | 92.8823 | 181 | 10 | 181 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | segdup | * | 96.5333 | 94.7644 | 98.3696 | 93.4752 | 181 | 10 | 181 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.3833 | 94.7646 | 98.0583 | 61.6187 | 2516 | 139 | 2525 | 50 | 25 | 50.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.8500 | 94.7664 | 99.0272 | 74.3896 | 507 | 28 | 509 | 5 | 4 | 80.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | * | * | 96.3018 | 94.7670 | 97.8872 | 49.6208 | 23524 | 1299 | 23536 | 508 | 491 | 96.6535 | |
| astatham-gatk | INDEL | I6_15 | HG002complexvar | hetalt | 97.3132 | 94.7670 | 100.0000 | 56.0117 | 1159 | 64 | 1200 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.4444 | 94.7674 | 98.1818 | 75.3363 | 163 | 9 | 162 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 75.6798 | 94.7674 | 62.9921 | 72.8632 | 163 | 9 | 160 | 94 | 2 | 2.1277 | |
| raldana-dualsentieon | INDEL | D6_15 | HG002complexvar | hetalt | 97.2668 | 94.7680 | 99.9010 | 47.1204 | 960 | 53 | 1009 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e0 | het | 95.2520 | 94.7686 | 95.7404 | 89.4183 | 471 | 26 | 472 | 21 | 3 | 14.2857 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 93.5793 | 94.7690 | 92.4191 | 52.4483 | 3569 | 197 | 3572 | 293 | 241 | 82.2526 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 93.5793 | 94.7690 | 92.4191 | 52.4483 | 3569 | 197 | 3572 | 293 | 241 | 82.2526 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.0123 | 94.7692 | 99.3641 | 23.2927 | 616 | 34 | 625 | 4 | 4 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.9212 | 94.7708 | 99.1715 | 26.5340 | 4404 | 243 | 4429 | 37 | 35 | 94.5946 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.1401 | 94.7708 | 99.6309 | 23.4581 | 6470 | 357 | 6479 | 24 | 24 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 95.5302 | 94.7711 | 96.3016 | 56.4893 | 16747 | 924 | 16743 | 643 | 577 | 89.7356 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 95.5302 | 94.7711 | 96.3016 | 56.4893 | 16747 | 924 | 16743 | 643 | 577 | 89.7356 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.1124 | 94.7719 | 99.5714 | 64.0050 | 8810 | 486 | 8829 | 38 | 38 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | HG002compoundhet | * | 95.5291 | 94.7736 | 96.2967 | 36.1965 | 8559 | 472 | 8555 | 329 | 326 | 99.0881 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.4351 | 94.7749 | 98.1545 | 42.9464 | 6548 | 361 | 6542 | 123 | 88 | 71.5447 | |
| gduggal-bwavard | INDEL | D1_5 | map_siren | homalt | 97.1880 | 94.7774 | 99.7245 | 70.3593 | 1107 | 61 | 1086 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 96.5468 | 94.7781 | 98.3827 | 85.6535 | 363 | 20 | 365 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 93.5431 | 94.7785 | 92.3395 | 52.9259 | 10528 | 580 | 10511 | 872 | 826 | 94.7248 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 95.9408 | 94.7790 | 97.1314 | 64.3062 | 3667 | 202 | 3623 | 107 | 103 | 96.2617 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.2092 | 94.7800 | 99.7663 | 39.0116 | 2542 | 140 | 2561 | 6 | 6 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 97.2273 | 94.7806 | 99.8035 | 33.5162 | 2506 | 138 | 2540 | 5 | 5 | 100.0000 | |