PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56151-56200 / 86044 show all | |||||||||||||||
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 87.2342 | 94.3005 | 81.1530 | 90.5033 | 364 | 22 | 366 | 85 | 3 | 3.5294 | |
| cchapple-custom | SNP | tv | map_l250_m0_e0 | homalt | 97.0667 | 94.3005 | 100.0000 | 91.7009 | 182 | 11 | 182 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.2878 | 94.3032 | 98.3577 | 77.3927 | 1076 | 65 | 1078 | 18 | 15 | 83.3333 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 92.3449 | 94.3042 | 90.4654 | 62.2051 | 1606 | 97 | 1594 | 168 | 164 | 97.6190 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 76.8075 | 94.3048 | 64.7869 | 87.6558 | 6491 | 392 | 6399 | 3478 | 109 | 3.1340 | |
| gduggal-bwavard | INDEL | I1_5 | map_siren | homalt | 96.9037 | 94.3069 | 99.6476 | 66.3105 | 1143 | 69 | 1131 | 4 | 2 | 50.0000 | |
| jlack-gatk | INDEL | I16_PLUS | * | * | 95.3468 | 94.3077 | 96.4091 | 70.3461 | 6014 | 363 | 6014 | 224 | 155 | 69.1964 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 89.6491 | 94.3079 | 85.4289 | 76.7105 | 729 | 44 | 727 | 124 | 122 | 98.3871 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.6131 | 94.3079 | 99.0337 | 49.0411 | 5832 | 352 | 5842 | 57 | 26 | 45.6140 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 73.6476 | 94.3083 | 60.4126 | 87.0492 | 1193 | 72 | 1230 | 806 | 74 | 9.1811 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 86.7610 | 94.3089 | 80.3318 | 79.6037 | 348 | 21 | 339 | 83 | 46 | 55.4217 | |
| hfeng-pmm3 | INDEL | D16_PLUS | HG002complexvar | het | 96.3171 | 94.3089 | 98.4127 | 66.5304 | 1044 | 63 | 806 | 13 | 7 | 53.8462 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.5054 | 94.3089 | 98.8067 | 30.3644 | 10473 | 632 | 11178 | 135 | 126 | 93.3333 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 96.8542 | 94.3107 | 99.5386 | 63.3094 | 862 | 52 | 863 | 4 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 94.6258 | 94.3116 | 94.9422 | 66.8176 | 6350 | 383 | 6401 | 341 | 317 | 92.9619 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 88.8393 | 94.3128 | 83.9662 | 66.8067 | 199 | 12 | 199 | 38 | 33 | 86.8421 | |
| cchapple-custom | INDEL | * | map_l250_m2_e1 | het | 91.3456 | 94.3128 | 88.5593 | 96.0927 | 199 | 12 | 209 | 27 | 2 | 7.4074 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m1_e0 | het | 96.5664 | 94.3144 | 98.9286 | 82.5218 | 282 | 17 | 277 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 95.7473 | 94.3151 | 97.2237 | 42.8173 | 17221 | 1038 | 17930 | 512 | 480 | 93.7500 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 64.2811 | 94.3173 | 48.7547 | 73.3962 | 1278 | 77 | 1292 | 1358 | 1314 | 96.7599 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m0_e0 | * | 93.2137 | 94.3182 | 92.1348 | 92.6899 | 166 | 10 | 164 | 14 | 4 | 28.5714 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m0_e0 | * | 94.8440 | 94.3182 | 95.3757 | 91.3802 | 166 | 10 | 165 | 8 | 2 | 25.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m2_e0 | * | 96.1200 | 94.3182 | 97.9920 | 81.1364 | 249 | 15 | 244 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e0 | * | 95.9264 | 94.3182 | 97.5904 | 81.3901 | 249 | 15 | 243 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m2_e0 | * | 96.1390 | 94.3182 | 98.0315 | 84.0452 | 249 | 15 | 249 | 5 | 2 | 40.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.8950 | 94.3201 | 99.6144 | 34.3188 | 13235 | 797 | 13433 | 52 | 50 | 96.1538 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e1 | het | 93.8879 | 94.3218 | 93.4579 | 89.6652 | 299 | 18 | 300 | 21 | 3 | 14.2857 | |
| astatham-gatk | INDEL | D1_5 | map_l100_m2_e1 | het | 95.9899 | 94.3218 | 97.7180 | 85.7871 | 1196 | 72 | 1199 | 28 | 4 | 14.2857 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m2_e1 | het | 96.5995 | 94.3218 | 98.9899 | 84.6986 | 299 | 18 | 294 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 94.2467 | 94.3223 | 94.1712 | 78.1883 | 515 | 31 | 517 | 32 | 11 | 34.3750 | |
| rpoplin-dv42 | INDEL | D1_5 | HG002compoundhet | hetalt | 96.8685 | 94.3226 | 99.5556 | 55.8683 | 9636 | 580 | 9632 | 43 | 42 | 97.6744 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.0727 | 94.3231 | 97.8884 | 82.5020 | 648 | 39 | 649 | 14 | 11 | 78.5714 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.0656 | 94.3233 | 99.9723 | 28.7295 | 3589 | 216 | 3606 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m1_e0 | * | 93.9359 | 94.3241 | 93.5508 | 86.7120 | 1263 | 76 | 1262 | 87 | 31 | 35.6322 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.0178 | 94.3253 | 99.8684 | 24.7525 | 748 | 45 | 759 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.5279 | 94.3253 | 98.8357 | 24.3640 | 748 | 45 | 764 | 9 | 8 | 88.8889 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 63.5123 | 94.3255 | 47.8735 | 39.2649 | 6300 | 379 | 6281 | 6839 | 6729 | 98.3916 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 96.9782 | 94.3258 | 99.7842 | 76.6072 | 1413 | 85 | 1387 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 96.2675 | 94.3265 | 98.2901 | 38.7683 | 6351 | 382 | 6323 | 110 | 70 | 63.6364 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.9685 | 94.3268 | 99.7624 | 46.4589 | 2494 | 150 | 2519 | 6 | 5 | 83.3333 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.0392 | 94.3279 | 99.9110 | 42.3116 | 3326 | 200 | 3366 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.0392 | 94.3279 | 99.9110 | 42.3116 | 3326 | 200 | 3366 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | HG002complexvar | hetalt | 96.6649 | 94.3284 | 99.1202 | 69.9029 | 316 | 19 | 338 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.9120 | 94.3289 | 99.6406 | 81.3092 | 2495 | 150 | 2495 | 9 | 3 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.9996 | 94.3320 | 97.7273 | 81.2766 | 233 | 14 | 215 | 5 | 3 | 60.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | HG002complexvar | hetalt | 96.7722 | 94.3320 | 99.3421 | 47.8261 | 233 | 14 | 453 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | SNP | tv | map_l250_m1_e0 | * | 94.0667 | 94.3332 | 93.8017 | 91.6023 | 2497 | 150 | 2497 | 165 | 33 | 20.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | HG002compoundhet | * | 96.1838 | 94.3347 | 98.1069 | 65.2150 | 11656 | 700 | 11660 | 225 | 222 | 98.6667 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.2270 | 94.3394 | 98.1917 | 57.1762 | 7933 | 476 | 7928 | 146 | 103 | 70.5479 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.0874 | 94.3396 | 100.0000 | 68.9441 | 50 | 3 | 50 | 0 | 0 | ||