PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54651-54700 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | I6_15 | map_l125_m2_e0 | het | 93.3333 | 93.3333 | 93.3333 | 93.0070 | 28 | 2 | 28 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l125_m2_e1 | het | 93.3333 | 93.3333 | 93.3333 | 93.1663 | 28 | 2 | 28 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l150_m1_e0 | het | 96.5517 | 93.3333 | 100.0000 | 95.4098 | 14 | 1 | 14 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l150_m2_e0 | het | 96.5517 | 93.3333 | 100.0000 | 96.0114 | 14 | 1 | 14 | 0 | 0 | ||
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 77.7778 | 93.3333 | 66.6667 | 94.0000 | 14 | 1 | 14 | 7 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 90.3226 | 93.3333 | 87.5000 | 96.2264 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 93.3333 | 93.3333 | 93.3333 | 88.0952 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | * | 93.3333 | 93.3333 | 93.3333 | 97.1042 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | * | 90.3226 | 93.3333 | 87.5000 | 97.2556 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | * | 90.3226 | 93.3333 | 87.5000 | 97.2603 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 89.3401 | 42 | 3 | 42 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l250_m1_e0 | het | 90.3226 | 93.3333 | 87.5000 | 97.9368 | 56 | 4 | 56 | 8 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l150_m1_e0 | * | 87.5000 | 93.3333 | 82.3529 | 95.3804 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 93.3333 | 0.0000 | 0.0000 | 14 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 93.3333 | 0.0000 | 0.0000 | 14 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 95.6098 | 93.3333 | 98.0000 | 75.7282 | 14 | 1 | 49 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 93.3333 | 93.3333 | 93.3333 | 96.5358 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 93.3333 | 93.3333 | 93.3333 | 96.4539 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 95.6656 | 14 | 1 | 14 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 95.7576 | 14 | 1 | 14 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.5517 | 93.3333 | 100.0000 | 88.8000 | 14 | 1 | 14 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l125_m1_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 92.8571 | 14 | 1 | 14 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l125_m2_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 93.7220 | 14 | 1 | 14 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l125_m2_e1 | homalt | 96.5517 | 93.3333 | 100.0000 | 93.9394 | 14 | 1 | 14 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 95.9770 | 14 | 1 | 14 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 96.0894 | 14 | 1 | 14 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l100_m0_e0 | het | 92.5620 | 93.3333 | 91.8033 | 92.7467 | 56 | 4 | 56 | 5 | 1 | 20.0000 | |
| asubramanian-gatk | INDEL | I6_15 | func_cds | homalt | 93.3333 | 93.3333 | 93.3333 | 40.0000 | 14 | 1 | 14 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.5517 | 93.3333 | 100.0000 | 88.7097 | 14 | 1 | 14 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m1_e0 | * | 90.3226 | 93.3333 | 87.5000 | 96.4365 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m2_e0 | * | 87.5000 | 93.3333 | 82.3529 | 96.6862 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m2_e1 | * | 87.5000 | 93.3333 | 82.3529 | 96.6926 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m1_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 92.9293 | 14 | 1 | 14 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m2_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 93.7778 | 14 | 1 | 14 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m2_e1 | homalt | 96.5517 | 93.3333 | 100.0000 | 94.0171 | 14 | 1 | 14 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 71.4286 | 28 | 2 | 28 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 76.0684 | 28 | 2 | 28 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 76.0684 | 28 | 2 | 28 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | map_l150_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 70.8333 | 14 | 1 | 14 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | map_l150_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 75.0000 | 14 | 1 | 14 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | map_l150_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 75.0000 | 14 | 1 | 14 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 71.4286 | 28 | 2 | 28 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 76.0684 | 28 | 2 | 28 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 76.0684 | 28 | 2 | 28 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 82.3529 | 93.3333 | 73.6842 | 95.2141 | 14 | 1 | 14 | 5 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 95.2055 | 14 | 1 | 14 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 95.3177 | 14 | 1 | 14 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | func_cds | homalt | 75.6757 | 93.3333 | 63.6364 | 35.2941 | 14 | 1 | 14 | 8 | 7 | 87.5000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.2758 | 93.3345 | 99.4086 | 38.9346 | 5503 | 393 | 6051 | 36 | 34 | 94.4444 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.2758 | 93.3345 | 99.4086 | 38.9346 | 5503 | 393 | 6051 | 36 | 34 | 94.4444 | |