PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5201-5250 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 94.1176 | 0 | 0 | 9 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 94.0000 | 0 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 89.6552 | 95.9778 | 0 | 0 | 26 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 77.7778 | 96.3415 | 0 | 0 | 7 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 91.6667 | 95.7447 | 0 | 0 | 11 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 95.8549 | 0 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 89.4737 | 96.3844 | 0 | 0 | 34 | 4 | 3 | 75.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 78.5714 | 96.3918 | 0 | 0 | 11 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 93.3333 | 96.2312 | 0 | 0 | 14 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.6038 | 0 | 0 | 9 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 94.1176 | 95.7393 | 0 | 0 | 16 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 100.0000 | 96.5278 | 0 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 88.8889 | 94.6746 | 0 | 0 | 8 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.5116 | 0 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 100.0000 | 96.7742 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 100.0000 | 92.3077 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 100.0000 | 97.2222 | 0 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 88.8889 | 94.6746 | 0 | 0 | 8 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 75.0000 | 94.0299 | 0 | 0 | 3 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.2381 | 0 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 94.8718 | 0 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 80.0000 | 95.1923 | 0 | 0 | 4 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 50.0000 | 95.3488 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.3488 | 0 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 100.0000 | 94.4444 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 100.0000 | 86.9565 | 0 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 100.0000 | 90.0000 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 100.0000 | 88.8889 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 75.0000 | 0 | 0 | 1 | 0 | 0 | ||
| jli-custom | SNP | * | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||