PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52051-52100 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | SNP | tv | map_l250_m2_e0 | het | 95.3430 | 91.2887 | 99.7743 | 74.4189 | 1771 | 169 | 1768 | 4 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | map_l250_m2_e1 | * | 77.7498 | 91.2913 | 67.7067 | 95.6730 | 304 | 29 | 434 | 207 | 49 | 23.6715 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m2_e1 | * | 94.8576 | 91.2913 | 98.7138 | 93.7286 | 304 | 29 | 307 | 4 | 1 | 25.0000 | |
| egarrison-hhga | INDEL | I1_5 | HG002compoundhet | het | 88.5536 | 91.2941 | 85.9729 | 82.4603 | 776 | 74 | 760 | 124 | 68 | 54.8387 | |
| raldana-dualsentieon | INDEL | * | HG002complexvar | hetalt | 95.3862 | 91.2949 | 99.8613 | 67.7087 | 3377 | 322 | 3600 | 5 | 5 | 100.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.0366 | 91.2990 | 99.0933 | 69.4457 | 15498 | 1477 | 15300 | 140 | 72 | 51.4286 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.0366 | 91.2990 | 99.0933 | 69.4457 | 15498 | 1477 | 15300 | 140 | 72 | 51.4286 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.3785 | 91.3011 | 99.8371 | 36.7431 | 2414 | 230 | 2451 | 4 | 3 | 75.0000 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 93.8698 | 91.3024 | 96.5857 | 72.7788 | 6078 | 579 | 6167 | 218 | 97 | 44.4954 | |
| dgrover-gatk | INDEL | * | map_l150_m2_e1 | hetalt | 95.4545 | 91.3043 | 100.0000 | 95.3846 | 21 | 2 | 21 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 95.4545 | 91.3043 | 100.0000 | 78.1250 | 21 | 2 | 21 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.6471 | 91.3043 | 94.0299 | 88.5470 | 63 | 6 | 63 | 4 | 4 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 91.3043 | 95.4545 | 68.5714 | 42 | 4 | 42 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.4545 | 91.3043 | 100.0000 | 90.5405 | 63 | 6 | 63 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 88.8218 | 91.3043 | 86.4706 | 35.3612 | 147 | 14 | 147 | 23 | 23 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.4545 | 91.3043 | 100.0000 | 12.5000 | 21 | 2 | 21 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.4545 | 91.3043 | 100.0000 | 91.5663 | 63 | 6 | 63 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | het | 83.7549 | 91.3043 | 77.3585 | 95.9726 | 42 | 4 | 41 | 12 | 4 | 33.3333 | |
| hfeng-pmm2 | INDEL | * | map_l150_m2_e1 | hetalt | 95.4545 | 91.3043 | 100.0000 | 95.5414 | 21 | 2 | 21 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | het | 92.2335 | 91.3043 | 93.1818 | 93.9477 | 42 | 4 | 41 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | * | map_l150_m2_e1 | hetalt | 95.4545 | 91.3043 | 100.0000 | 95.1501 | 21 | 2 | 21 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e0 | het | 79.0507 | 91.3043 | 69.6970 | 89.1089 | 42 | 4 | 69 | 30 | 19 | 63.3333 | |
| hfeng-pmm1 | INDEL | * | map_l150_m2_e1 | hetalt | 95.4545 | 91.3043 | 100.0000 | 95.5414 | 21 | 2 | 21 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | map_l250_m0_e0 | * | 75.6757 | 91.3043 | 64.6154 | 97.7586 | 42 | 4 | 42 | 23 | 2 | 8.6957 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m2_e1 | homalt | 94.3820 | 91.3043 | 97.6744 | 93.9266 | 42 | 4 | 42 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m1_e0 | het | 70.0000 | 91.3043 | 56.7568 | 95.0634 | 42 | 4 | 42 | 32 | 22 | 68.7500 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 93.3333 | 91.3043 | 95.4545 | 78.4314 | 21 | 2 | 21 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m2_e1 | homalt | 94.3820 | 91.3043 | 97.6744 | 93.2390 | 42 | 4 | 42 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.4545 | 91.3043 | 100.0000 | 88.1481 | 63 | 6 | 64 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 95.4545 | 91.3043 | 100.0000 | 72.2222 | 21 | 2 | 20 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.3820 | 91.3043 | 97.6744 | 49.4118 | 42 | 4 | 42 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 95.4545 | 91.3043 | 100.0000 | 69.3396 | 63 | 6 | 65 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m1_e0 | het | 95.1158 | 91.3043 | 99.2593 | 81.1453 | 273 | 26 | 268 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.4545 | 91.3043 | 100.0000 | 37.1429 | 21 | 2 | 22 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | map_l250_m2_e0 | * | 93.0748 | 91.3043 | 94.9153 | 95.7686 | 168 | 16 | 168 | 9 | 4 | 44.4444 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m1_e0 | het | 86.4024 | 91.3043 | 82.0000 | 93.3066 | 42 | 4 | 41 | 9 | 4 | 44.4444 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 91.3043 | 91.3043 | 91.3043 | 88.3838 | 21 | 2 | 21 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | segdup | het | 89.9018 | 91.3043 | 88.5417 | 91.7241 | 84 | 8 | 85 | 11 | 10 | 90.9091 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m1_e0 | het | 87.3023 | 91.3043 | 83.6364 | 88.7526 | 42 | 4 | 46 | 9 | 5 | 55.5556 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 70.0000 | 91.3043 | 56.7568 | 82.5472 | 21 | 2 | 21 | 16 | 10 | 62.5000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e1 | hetalt | 91.3043 | 91.3043 | 91.3043 | 96.2602 | 21 | 2 | 21 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m0_e0 | * | 93.3333 | 91.3043 | 95.4545 | 97.5528 | 42 | 4 | 42 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.4545 | 91.3043 | 100.0000 | 8.6957 | 21 | 2 | 21 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 91.3043 | 0.0000 | 0.0000 | 21 | 2 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 76.3636 | 91.3043 | 65.6250 | 76.2963 | 21 | 2 | 21 | 11 | 10 | 90.9091 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.4545 | 91.3043 | 100.0000 | 12.5000 | 21 | 2 | 21 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.4545 | 91.3043 | 100.0000 | 12.5000 | 21 | 2 | 21 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l150_m2_e1 | hetalt | 0.0000 | 91.3043 | 0.0000 | 0.0000 | 21 | 2 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l150_m2_e1 | hetalt | 95.4545 | 91.3043 | 100.0000 | 95.3020 | 21 | 2 | 21 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 91.3043 | 95.4545 | 67.8832 | 42 | 4 | 42 | 2 | 2 | 100.0000 | |