PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51601-51650 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | * | map_l125_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 95.7082 | 10 | 1 | 10 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.2381 | 90.9091 | 100.0000 | 98.8124 | 10 | 1 | 10 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m1_e0 | * | 86.9565 | 90.9091 | 83.3333 | 95.7143 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m2_e0 | * | 86.9565 | 90.9091 | 83.3333 | 96.2025 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m2_e1 | * | 86.9565 | 90.9091 | 83.3333 | 96.2145 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 82.4561 | 20 | 2 | 20 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 84.1270 | 20 | 2 | 20 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 84.6154 | 20 | 2 | 20 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 95.2381 | 90.9091 | 100.0000 | 84.8837 | 10 | 1 | 13 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.2381 | 90.9091 | 100.0000 | 98.8584 | 10 | 1 | 10 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.2381 | 90.9091 | 100.0000 | 63.9535 | 30 | 3 | 31 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | map_l150_m1_e0 | * | 90.9091 | 90.9091 | 90.9091 | 96.6463 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l150_m2_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.0270 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l150_m2_e1 | * | 90.9091 | 90.9091 | 90.9091 | 97.0430 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 83.1933 | 20 | 2 | 20 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 84.7328 | 20 | 2 | 20 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 85.1852 | 20 | 2 | 20 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.3571 | 90.9091 | 98.0769 | 59.0551 | 50 | 5 | 51 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l150_m1_e0 | * | 86.9565 | 90.9091 | 83.3333 | 96.2382 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l150_m2_e0 | * | 86.9565 | 90.9091 | 83.3333 | 96.5909 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l150_m2_e1 | * | 86.9565 | 90.9091 | 83.3333 | 96.6102 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 82.6087 | 20 | 2 | 20 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 84.2520 | 20 | 2 | 20 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 84.7328 | 20 | 2 | 20 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 90.9091 | 0.0000 | 0.0000 | 40 | 4 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 90.9091 | 0.0000 | 0.0000 | 40 | 4 | 0 | 0 | 0 | ||
| ciseli-custom | SNP | ti | tech_badpromoters | het | 79.2079 | 90.9091 | 70.1754 | 39.3617 | 40 | 4 | 40 | 17 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 95.2381 | 90.9091 | 100.0000 | 84.1463 | 10 | 1 | 13 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 93.7973 | 90.9091 | 96.8750 | 63.2184 | 30 | 3 | 31 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 90.9091 | 0.0000 | 0.0000 | 20 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 90.9091 | 0.0000 | 0.0000 | 20 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 90.9091 | 0.0000 | 0.0000 | 20 | 2 | 0 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 95.2381 | 90.9091 | 100.0000 | 83.1169 | 10 | 1 | 13 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 94.9615 | 90.9091 | 99.3921 | 56.0160 | 310 | 31 | 327 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.4654 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.6891 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | * | 90.9091 | 90.9091 | 90.9091 | 97.6987 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l250_m2_e0 | * | 93.0233 | 90.9091 | 95.2381 | 96.9208 | 20 | 2 | 20 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l250_m2_e1 | * | 93.0233 | 90.9091 | 95.2381 | 97.0213 | 20 | 2 | 20 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l150_m1_e0 | * | 90.9091 | 90.9091 | 90.9091 | 94.9074 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l150_m2_e0 | * | 90.9091 | 90.9091 | 90.9091 | 95.7198 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l150_m2_e1 | * | 86.9565 | 90.9091 | 83.3333 | 95.3668 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l250_m2_e0 | het | 91.6031 | 90.9091 | 92.3077 | 97.0252 | 60 | 6 | 60 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l250_m2_e1 | het | 91.6031 | 90.9091 | 92.3077 | 97.1302 | 60 | 6 | 60 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 81.1321 | 20 | 2 | 20 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 82.6087 | 20 | 2 | 20 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 83.1933 | 20 | 2 | 20 | 0 | 0 | ||
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.5236 | 90.9091 | 98.4375 | 94.3662 | 60 | 6 | 63 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | map_l125_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 95.5556 | 10 | 1 | 10 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l100_m0_e0 | * | 92.3077 | 90.9091 | 93.7500 | 93.5223 | 30 | 3 | 30 | 2 | 1 | 50.0000 | |