PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51551-51600 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.2539 | 90.8867 | 97.8801 | 82.7110 | 2952 | 296 | 2955 | 64 | 9 | 14.0625 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.5017 | 90.8883 | 94.1735 | 55.0486 | 3571 | 358 | 3572 | 221 | 201 | 90.9502 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.8332 | 90.8911 | 96.9721 | 73.4710 | 3672 | 368 | 3651 | 114 | 38 | 33.3333 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 94.6807 | 90.9033 | 98.7857 | 42.8578 | 11382 | 1139 | 23592 | 290 | 233 | 80.3448 | |
| gduggal-bwafb | INDEL | I6_15 | map_l100_m1_e0 | homalt | 93.7500 | 90.9091 | 96.7742 | 81.7647 | 30 | 3 | 30 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l100_m2_e0 | homalt | 93.7500 | 90.9091 | 96.7742 | 83.7696 | 30 | 3 | 30 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l100_m2_e1 | homalt | 93.7500 | 90.9091 | 96.7742 | 84.1026 | 30 | 3 | 30 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.2381 | 90.9091 | 100.0000 | 99.3857 | 10 | 1 | 10 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l250_m0_e0 | het | 92.3077 | 90.9091 | 93.7500 | 97.0936 | 30 | 3 | 30 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l250_m2_e0 | * | 93.0233 | 90.9091 | 95.2381 | 95.9615 | 20 | 2 | 20 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l250_m2_e1 | * | 93.0233 | 90.9091 | 95.2381 | 96.0452 | 20 | 2 | 20 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | * | tech_badpromoters | homalt | 92.3077 | 90.9091 | 93.7500 | 53.6232 | 30 | 3 | 30 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.2381 | 90.9091 | 100.0000 | 99.4366 | 10 | 1 | 10 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l250_m0_e0 | het | 88.2353 | 90.9091 | 85.7143 | 95.6950 | 30 | 3 | 30 | 5 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m1_e0 | homalt | 94.1176 | 90.9091 | 97.5610 | 91.9450 | 40 | 4 | 40 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 81.4312 | 90.9091 | 73.7430 | 94.9535 | 130 | 13 | 132 | 47 | 9 | 19.1489 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.1918 | 90.9091 | 75.0000 | 96.2512 | 60 | 6 | 60 | 20 | 3 | 15.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 96.6197 | 10 | 1 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.3412 | 90.9091 | 98.0427 | 61.3214 | 560 | 56 | 551 | 11 | 10 | 90.9091 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m1_e0 | het | 95.2381 | 90.9091 | 100.0000 | 93.9394 | 10 | 1 | 10 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 85.9259 | 20 | 2 | 19 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l125_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 95.7082 | 10 | 1 | 10 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 95.2381 | 90.9091 | 100.0000 | 82.8947 | 10 | 1 | 13 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 87.0748 | 20 | 2 | 19 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 86.8421 | 20 | 2 | 20 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l125_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 96.7742 | 10 | 1 | 12 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | map_l250_m0_e0 | het | 89.5522 | 90.9091 | 88.2353 | 97.8358 | 30 | 3 | 30 | 4 | 2 | 50.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l250_m1_e0 | het | 90.9091 | 90.9091 | 90.9091 | 97.2569 | 10 | 1 | 10 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.4239 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.6645 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | * | 90.9091 | 90.9091 | 90.9091 | 97.6695 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 81.9820 | 20 | 2 | 20 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 83.7398 | 20 | 2 | 20 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 84.2520 | 20 | 2 | 20 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 86.0294 | 20 | 2 | 19 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 87.3333 | 20 | 2 | 19 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 87.6623 | 20 | 2 | 19 | 0 | 0 | ||
| jlack-gatk | INDEL | * | map_l125_m0_e0 | hetalt | 90.9091 | 90.9091 | 90.9091 | 95.4357 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.3571 | 90.9091 | 98.0769 | 63.8889 | 50 | 5 | 51 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 93.7973 | 90.9091 | 96.8750 | 63.2184 | 30 | 3 | 31 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | map_l100_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 90.9621 | 30 | 3 | 31 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 95.2381 | 90.9091 | 100.0000 | 83.9506 | 10 | 1 | 13 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.3301 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 90.1720 | 40 | 4 | 40 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 90.9502 | 40 | 4 | 40 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 83.0508 | 20 | 2 | 20 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 84.6154 | 20 | 2 | 20 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 85.0746 | 20 | 2 | 20 | 0 | 0 | ||
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.2029 | 90.9091 | 97.7444 | 92.5113 | 130 | 13 | 130 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 93.0233 | 90.9091 | 95.2381 | 93.5252 | 60 | 6 | 60 | 3 | 3 | 100.0000 | |