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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1027 1028 1029 1030 1031 1032 1033 1034 1035 ... 1720 1721 » 51501-51550 / 86044 show all
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	94.9242	90.7895	99.4536	60.9392	345	35	364	2	2	100.0000
gduggal-snapvard	INDEL	D1_5	map_l150_m1_e0	homalt	94.6446	90.7895	98.8417	83.6490	207	21	256	3	3	100.0000
ckim-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	94.9242	90.7895	99.4536	60.9392	345	35	364	2	2	100.0000
ltrigg-rtg1	INDEL	D16_PLUS	*	hetalt	94.7356	90.7915	99.0379	41.7792	1755	178	1750	17	17	100.0000
gduggal-bwafb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	91.9041	90.7937	93.0421	69.1771	572	58	575	43	30	69.7674
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	*	91.8860	90.8028	92.9954	40.2854	22283	2257	23114	1741	1173	67.3751
dgrover-gatk	INDEL	D16_PLUS	map_l100_m1_e0	*	86.8132	90.8046	83.1579	94.5371	79	8	79	16	4	25.0000
hfeng-pmm3	INDEL	D16_PLUS	map_l100_m1_e0	*	90.8046	90.8046	90.8046	92.7980	79	8	79	8	2	25.0000
ckim-dragen	INDEL	D16_PLUS	map_l100_m1_e0	*	82.7225	90.8046	75.9615	95.2140	79	8	79	25	4	16.0000
astatham-gatk	INDEL	D16_PLUS	map_l100_m1_e0	*	89.2655	90.8046	87.7778	94.9153	79	8	79	11	4	36.3636
egarrison-hhga	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	het	79.4418	90.8058	70.6058	71.2226	879	89	944	393	338	86.0051
gduggal-snapvard	INDEL	D1_5	map_l100_m2_e1	homalt	94.3455	90.8065	98.1716	76.0928	563	57	698	13	12	92.3077
ghariani-varprowl	INDEL	D1_5	segdup	homalt	94.4928	90.8078	98.4894	93.1837	326	33	326	5	4	80.0000
jpowers-varprowl	INDEL	D1_5	segdup	homalt	94.4928	90.8078	98.4894	93.0154	326	33	326	5	4	80.0000
gduggal-bwavard	INDEL	D1_5	*	homalt	95.1427	90.8106	99.9088	44.5205	44430	4496	43826	40	27	67.5000
ciseli-custom	SNP	ti	map_l100_m2_e1	homalt	91.1369	90.8132	91.4629	61.7425	16795	1699	16756	1564	1245	79.6036
qzeng-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	89.7127	90.8139	88.6378	45.2529	10064	1018	10984	1408	719	51.0653
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	94.7052	90.8178	98.9404	37.4482	633	64	747	8	8	100.0000
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	94.7059	90.8178	98.9418	37.8800	633	64	748	8	8	100.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	94.7052	90.8178	98.9404	37.4482	633	64	747	8	8	100.0000
jpowers-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	88.3579	90.8190	86.0267	90.7720	1375	139	1416	230	12	5.2174
jpowers-varprowl	INDEL	I1_5	HG002complexvar	*	92.7158	90.8192	94.6934	52.3150	30300	3063	30175	1691	1600	94.6186
asubramanian-gatk	SNP	ti	HG002complexvar	hetalt	94.4724	90.8213	98.4293	40.4984	188	19	188	3	0	0.0000
jlack-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	93.4254	90.8213	96.1832	73.6419	376	38	378	15	8	53.3333
cchapple-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	0.0000	90.8338	0.0000	0.0000	1754	177	0	0	0
cchapple-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	0.0000	90.8338	0.0000	0.0000	1754	177	0	0	0
raldana-dualsentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	88.8647	90.8347	86.9783	67.1961	555	56	521	78	77	98.7179
ltrigg-rtg1	INDEL	*	HG002complexvar	hetalt	94.3098	90.8354	98.0606	74.9985	3360	339	4045	80	79	98.7500
cchapple-custom	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	92.5741	90.8365	94.3795	65.5301	1933	195	2099	125	115	92.0000
cchapple-custom	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.0259	90.8384	97.4454	47.9934	3619	365	3700	97	76	78.3505
mlin-fermikit	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	84.5016	90.8408	78.9894	50.4937	1210	122	1188	316	315	99.6835
jlack-gatk	INDEL	D16_PLUS	*	hetalt	94.8361	90.8432	99.1960	37.9289	1756	177	1974	16	15	93.7500
cchapple-custom	INDEL	D16_PLUS	*	hetalt	0.0000	90.8432	0.0000	0.0000	1756	177	0	0	0
ghariani-varprowl	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	62.4499	90.8511	47.5768	61.6650	1281	129	1286	1417	1364	96.2597
qzeng-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt		90.8537		100.0000	298	30	0	0	0
asubramanian-gatk	INDEL	*	map_l150_m0_e0	homalt	94.6072	90.8537	98.6842	92.1080	149	15	150	2	1	50.0000
qzeng-custom	INDEL	I6_15	segdup	*	89.9918	90.8571	89.1429	92.6931	159	16	156	19	4	21.0526
gduggal-bwafb	INDEL	I6_15	segdup	*	94.3926	90.8571	98.2143	89.2994	159	16	165	3	3	100.0000
ltrigg-rtg1	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	94.5657	90.8582	98.5887	60.6037	487	49	489	7	5	71.4286
ltrigg-rtg1	INDEL	D16_PLUS	HG002compoundhet	*	94.7189	90.8586	98.9217	29.6040	2127	214	2110	23	23	100.0000
hfeng-pmm1	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	*	94.9438	90.8602	99.4118	70.1230	169	17	169	1	1	100.0000
hfeng-pmm2	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	*	94.9438	90.8602	99.4118	70.1230	169	17	169	1	1	100.0000
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	93.2644	90.8623	95.7970	33.1527	18714	1882	18667	819	734	89.6215
hfeng-pmm3	INDEL	D16_PLUS	HG002compoundhet	het	85.4445	90.8642	80.6349	57.3748	368	37	254	61	60	98.3607
anovak-vg	INDEL	D1_5	HG002complexvar	het	92.0015	90.8693	93.1622	52.9821	18869	1896	19565	1436	834	58.0780
gduggal-snapvard	INDEL	D1_5	map_l100_m1_e0	homalt	94.3471	90.8784	98.0910	75.2992	538	54	668	13	12	92.3077
egarrison-hhga	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	93.0142	90.8795	95.2517	63.6364	1674	168	1665	83	41	49.3976
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	89.1599	90.8840	87.5000	82.4945	329	33	210	30	30	100.0000
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	94.8587	90.8856	99.1952	37.8556	1755	176	1972	16	15	93.7500
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	94.8587	90.8856	99.1952	37.8556	1755	176	1972	16	15	93.7500

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