PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1022 1023 1024 1025 1026 1027 1028 1029 1030 ... 1720 1721 » 51251-51300 / 86044 show all
anovak-vg	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	92.6984	90.4665	95.0431	49.8920	446	47	441	23	12	52.1739
anovak-vg	SNP	*	map_l125_m1_e0	het	77.1793	90.4691	67.2939	76.7918	25686	2706	25425	12357	2688	21.7529
asubramanian-gatk	INDEL	D6_15	map_l100_m1_e0	het	91.9355	90.4762	93.4426	91.7344	114	12	114	8	2	25.0000
asubramanian-gatk	INDEL	I16_PLUS	map_siren	homalt	92.6829	90.4762	95.0000	95.0249	19	2	19	1	1	100.0000
astatham-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	het	92.6829	90.4762	95.0000	99.3670	38	4	38	2	0	0.0000
asubramanian-gatk	INDEL	*	map_l150_m1_e0	hetalt	95.0000	90.4762	100.0000	95.2607	19	2	20	0	0
asubramanian-gatk	INDEL	*	map_l150_m2_e0	hetalt	95.0000	90.4762	100.0000	95.8763	19	2	20	0	0
ghariani-varprowl	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	*	80.3252	90.4762	72.2222	91.7808	38	4	39	15	2	13.3333
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	95.0000	90.4762	100.0000	99.9564	19	2	19	0	0
rpoplin-dv42	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	92.6528	90.4762	94.9367	73.7977	152	16	150	8	7	87.5000
raldana-dualsentieon	INDEL	*	map_l125_m2_e0	hetalt	95.0000	90.4762	100.0000	91.2442	38	4	38	0	0
ndellapenna-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	77.5510	90.4762	67.8571	99.9391	19	2	19	9	7	77.7778
mlin-fermikit	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	68.8406	90.4762	55.5556	99.9404	19	2	20	16	16	100.0000
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_diTR_51to200	*	95.0000	90.4762	100.0000	97.4342	38	4	38	0	0
ckim-isaac	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	homalt	95.0000	90.4762	100.0000	24.0000	19	2	19	0	0
egarrison-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	93.8272	90.4762	97.4359	61.7647	76	8	76	2	2	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	het	91.5663	90.4762	92.6829	99.3618	38	4	38	3	0	0.0000
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	het	91.5663	90.4762	92.6829	99.3598	38	4	38	3	0	0.0000
egarrison-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	80.8511	90.4762	73.0769	99.9443	19	2	19	7	6	85.7143
jlack-gatk	INDEL	*	map_l125_m2_e0	hetalt	93.8272	90.4762	97.4359	93.7500	38	4	38	1	0	0.0000
jlack-gatk	INDEL	*	map_l150_m1_e0	hetalt	92.6829	90.4762	95.0000	95.2830	19	2	19	1	0	0.0000
jlack-gatk	INDEL	*	map_l150_m2_e0	hetalt	92.6829	90.4762	95.0000	95.8506	19	2	19	1	0	0.0000
jlack-gatk	INDEL	D1_5	map_siren	hetalt	95.0000	90.4762	100.0000	90.7543	76	8	76	0	0
jlack-gatk	INDEL	I16_PLUS	map_siren	homalt	90.4762	90.4762	90.4762	95.1276	19	2	19	2	1	50.0000
jli-custom	INDEL	*	map_l125_m2_e0	hetalt	95.0000	90.4762	100.0000	93.1777	38	4	38	0	0
jpowers-varprowl	INDEL	*	map_l250_m2_e0	het	91.1271	90.4762	91.7874	97.0352	190	20	190	17	10	58.8235
ltrigg-rtg2	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	het	95.0000	90.4762	100.0000	99.0568	38	4	40	0	0
jpowers-varprowl	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	*	81.1610	90.4762	73.5849	91.1519	38	4	39	14	2	14.2857
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	95.0000	90.4762	100.0000	99.9546	19	2	20	0	0
ckim-dragen	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	het	95.0000	90.4762	100.0000	99.3499	38	4	38	0	0
ckim-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_51to200	*	95.0000	90.4762	100.0000	97.4342	38	4	38	0	0
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	homalt	95.0000	90.4762	100.0000	54.7619	19	2	19	0	0
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	92.1833	90.4762	93.9560	39.3333	418	44	171	11	10	90.9091
eyeh-varpipe	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	homalt	38.3408	90.4762	24.3243	23.7113	19	2	18	56	55	98.2143
anovak-vg	SNP	*	map_l125_m2_e0	het	77.4707	90.4768	67.7339	78.1138	26526	2792	26255	12507	2731	21.8358
mlin-fermikit	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	86.7858	90.4797	83.3817	76.0514	1226	129	1149	229	205	89.5197
anovak-vg	INDEL	D1_5	segdup	*	91.5860	90.4805	92.7189	94.7590	998	105	1006	79	52	65.8228
mlin-fermikit	INDEL	D6_15	HG002complexvar	het	92.4085	90.4808	94.4202	55.5173	2823	297	2809	166	152	91.5663
ndellapenna-hhga	INDEL	I16_PLUS	*	*	92.8570	90.4814	95.3607	63.8712	5770	607	5776	281	194	69.0391
mlin-fermikit	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	83.0274	90.4837	76.7064	50.3167	13226	1391	12935	3928	3882	98.8289
gduggal-snapplat	SNP	ti	map_l125_m0_e0	het	91.6658	90.4877	92.8749	86.7400	7477	786	7482	574	330	57.4913
ckim-isaac	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	93.5449	90.4908	96.8125	75.4534	3835	403	3918	129	10	7.7519
ltrigg-rtg1	INDEL	*	map_l250_m1_e0	*	94.3636	90.4918	98.5816	93.0781	276	29	278	4	1	25.0000
asubramanian-gatk	INDEL	D1_5	map_l150_m2_e0	homalt	94.6004	90.4959	99.0950	89.2457	219	23	219	2	1	50.0000
ciseli-custom	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	87.8840	90.4959	85.4187	61.0813	876	92	867	148	71	47.9730
mlin-fermikit	SNP	tv	HG002compoundhet	*	91.2208	90.4965	91.9568	50.8884	8075	848	8083	707	593	83.8755
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	93.8949	90.4986	97.5560	73.6447	962	101	958	24	8	33.3333
eyeh-varpipe	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	88.8955	90.5000	87.3469	59.7701	181	19	214	31	31	100.0000
anovak-vg	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	85.1154	90.5013	80.3346	69.7300	30079	3157	33518	8205	5776	70.3961
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	91.0253	90.5074	91.5493	68.7397	553	58	520	48	46	95.8333

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge