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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1019 1020 1021 1022 1023 1024 1025 1026 1027 ... 1720 1721 » 51101-51150 / 86044 show all
jpowers-varprowl	INDEL	*	segdup	homalt	93.9252	90.2083	97.9615	91.6422	866	94	865	18	17	94.4444
gduggal-bwafb	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	93.9002	90.2088	97.9065	45.7445	3326	361	3414	73	65	89.0411
hfeng-pmm3	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	94.5603	90.2098	99.3517	87.1432	2451	266	2452	16	4	25.0000
ltrigg-rtg1	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	93.2272	90.2128	96.4502	72.2490	1272	138	1277	47	13	27.6596
ckim-isaac	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	93.1844	90.2139	96.3573	74.4602	9744	1057	9893	374	179	47.8610
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	91.0653	90.2147	91.9320	48.7934	10713	1162	10768	945	395	41.7989
ndellapenna-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	92.7374	90.2174	95.4023	68.7050	83	9	83	4	3	75.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	93.5818	90.2196	97.2043	65.2466	904	98	904	26	23	88.4615
jlack-gatk	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	91.4681	90.2214	92.7497	68.5930	9088	985	8942	699	645	92.2747
jlack-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	91.9540	90.2256	93.7500	86.9919	120	13	105	7	0	0.0000
egarrison-hhga	INDEL	I16_PLUS	HG002complexvar	het	93.2920	90.2256	96.5742	65.0712	600	65	592	21	7	33.3333
egarrison-hhga	INDEL	I16_PLUS	*	*	92.9799	90.2305	95.9020	62.0328	5754	623	5757	246	165	67.0732
gduggal-snapplat	SNP	*	map_l150_m2_e0	*	92.7527	90.2330	95.4173	85.0649	28741	3111	28754	1381	761	55.1050
egarrison-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	93.5967	90.2348	97.2188	50.5577	3151	341	3146	90	73	81.1111
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	94.4937	90.2365	99.1726	34.9981	1488	161	1678	14	14	100.0000
ltrigg-rtg2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	94.6096	90.2375	99.4269	52.7740	342	37	347	2	2	100.0000
mlin-fermikit	SNP	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	70.4762	90.2439	57.8125	92.6606	37	4	37	27	26	96.2963
mlin-fermikit	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	71.1538	90.2439	58.7302	92.5969	37	4	37	26	19	73.0769
gduggal-bwaplat	SNP	ti	tech_badpromoters	homalt	94.8718	90.2439	100.0000	44.7761	37	4	37	0	0
gduggal-bwavard	INDEL	*	map_l150_m0_e0	homalt	94.2675	90.2439	98.6667	88.4080	148	16	148	2	2	100.0000
gduggal-bwafb	SNP	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	86.0465	90.2439	82.2222	92.8458	37	4	37	8	6	75.0000
eyeh-varpipe	SNP	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	50.6572	90.2439	35.2113	79.8867	37	4	25	46	14	30.4348
cchapple-custom	SNP	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	93.6380	90.2439	97.2973	85.9316	37	4	36	1	1	100.0000
ciseli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	51.3139	90.2439	35.8491	90.7906	37	4	38	68	7	10.2941
ckim-isaac	SNP	ti	tech_badpromoters	homalt	94.8718	90.2439	100.0000	22.9167	37	4	37	0	0
gduggal-snapplat	SNP	ti	tech_badpromoters	homalt	94.8718	90.2439	100.0000	44.7761	37	4	37	0	0
jpowers-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	85.9498	90.2468	82.0433	90.3390	768	83	795	174	11	6.3218
asubramanian-gatk	INDEL	I16_PLUS	HG002compoundhet	hetalt	94.3857	90.2532	98.9147	46.6501	1889	204	1914	21	21	100.0000
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	94.8267	90.2557	99.8855	32.3046	4307	465	4360	5	4	80.0000
gduggal-snapvard	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	92.9151	90.2558	95.7358	51.6673	2399	259	29209	1301	1194	91.7756
gduggal-bwafb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	91.8726	90.2567	93.5475	72.9167	3270	353	3320	229	219	95.6332
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	*	92.7288	90.2597	95.3368	64.7810	556	60	552	27	25	92.5926
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	94.6842	90.2604	99.5639	40.3949	15078	1627	15298	67	60	89.5522
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	94.6842	90.2604	99.5639	40.3949	15078	1627	15298	67	60	89.5522
gduggal-bwavard	INDEL	*	func_cds	homalt	94.8837	90.2655	100.0000	28.4698	204	22	201	0	0
asubramanian-gatk	INDEL	D1_5	map_l100_m0_e0	*	92.4081	90.2665	94.6537	88.7322	779	84	779	44	5	11.3636
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	94.6297	90.2717	99.4297	29.8103	7275	784	7323	42	36	85.7143
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	94.6297	90.2717	99.4297	29.8103	7275	784	7323	42	36	85.7143
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	93.4806	90.2724	96.9252	69.0862	1392	150	1387	44	22	50.0000
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	94.8351	90.2733	99.8824	28.4609	4195	452	4248	5	4	80.0000
gduggal-bwaplat	INDEL	I1_5	segdup	*	94.4660	90.2738	99.0664	96.2092	956	103	955	9	6	66.6667
asubramanian-gatk	INDEL	I16_PLUS	*	hetalt	94.3306	90.2765	98.7661	58.9229	1894	204	1921	24	24	100.0000
raldana-dualsentieon	INDEL	I6_15	map_siren	hetalt	94.8905	90.2778	100.0000	74.5098	65	7	65	0	0
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	92.4298	90.2778	94.6869	59.3991	520	56	499	28	9	32.1429
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	94.4019	90.2778	98.9209	55.1854	260	28	825	9	7	77.7778
ltrigg-rtg2	INDEL	I6_15	map_siren	hetalt	94.8905	90.2778	100.0000	81.4085	65	7	66	0	0
gduggal-bwafb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	92.6625	90.2806	95.1736	68.0131	2220	239	2879	146	107	73.2877
ltrigg-rtg2	INDEL	*	map_siren	hetalt	94.4986	90.2834	99.1266	91.2895	223	24	227	2	2	100.0000
asubramanian-gatk	INDEL	D16_PLUS	HG002complexvar	hetalt	93.1106	90.2834	96.1207	48.2143	223	24	446	18	17	94.4444
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	94.1296	90.2834	98.3180	72.2646	669	72	643	11	9	81.8182

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