PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50901-50950 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D6_15 | tech_badpromoters | het | 94.7368 | 90.0000 | 100.0000 | 50.0000 | 9 | 1 | 9 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 94.7368 | 90.0000 | 100.0000 | 99.4962 | 9 | 1 | 10 | 0 | 0 | ||
| gduggal-bwafb | INDEL | C1_5 | * | * | 89.4410 | 90.0000 | 88.8889 | 97.6804 | 9 | 1 | 8 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m0_e0 | het | 92.7976 | 90.0000 | 95.7746 | 84.8614 | 54 | 6 | 68 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 94.7368 | 90.0000 | 100.0000 | 99.5183 | 9 | 1 | 10 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C1_5 | * | * | 35.4772 | 90.0000 | 22.0930 | 85.2234 | 9 | 1 | 19 | 67 | 6 | 8.9552 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 94.6120 | 90.0000 | 99.7222 | 61.7428 | 342 | 38 | 359 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 94.8571 | 9 | 1 | 9 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 74.2857 | 18 | 2 | 18 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 77.2152 | 18 | 2 | 18 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 77.5000 | 18 | 2 | 18 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 74.2857 | 18 | 2 | 18 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 77.2152 | 18 | 2 | 18 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 77.5000 | 18 | 2 | 18 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | decoy | * | 94.7368 | 90.0000 | 100.0000 | 99.9971 | 9 | 1 | 9 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l125_m1_e0 | het | 54.1353 | 90.0000 | 38.7097 | 94.2056 | 18 | 2 | 24 | 38 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m2_e0 | het | 52.3636 | 90.0000 | 36.9231 | 94.2376 | 18 | 2 | 24 | 41 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m2_e1 | het | 52.7550 | 90.0000 | 37.3134 | 94.1434 | 18 | 2 | 25 | 42 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 94.7368 | 90.0000 | 100.0000 | 99.7088 | 9 | 1 | 5 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_siren | homalt | 85.4475 | 90.0000 | 81.3333 | 76.9231 | 117 | 13 | 122 | 28 | 4 | 14.2857 | |
| ndellapenna-hhga | INDEL | D6_15 | tech_badpromoters | het | 94.7368 | 90.0000 | 100.0000 | 55.0000 | 9 | 1 | 9 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 94.7368 | 90.0000 | 100.0000 | 74.5283 | 54 | 6 | 54 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | decoy | * | 94.7368 | 90.0000 | 100.0000 | 99.9905 | 9 | 1 | 9 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 67.2727 | 18 | 2 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 71.4286 | 18 | 2 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 71.4286 | 18 | 2 | 18 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 81.8182 | 90.0000 | 75.0000 | 99.2945 | 9 | 1 | 9 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | C1_5 | * | * | 90.0000 | 100.0000 | 9 | 1 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 90.0000 | 90.0000 | 90.0000 | 99.1349 | 9 | 1 | 9 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 85.7143 | 90.0000 | 81.8182 | 99.3612 | 9 | 1 | 9 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m1_e0 | het | 92.3077 | 90.0000 | 94.7368 | 91.8103 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m2_e0 | het | 92.3077 | 90.0000 | 94.7368 | 92.4901 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m2_e1 | het | 92.3077 | 90.0000 | 94.7368 | 92.6357 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 94.7368 | 90.0000 | 100.0000 | 99.3088 | 9 | 1 | 9 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m1_e0 | het | 93.1034 | 90.0000 | 96.4286 | 89.8917 | 27 | 3 | 27 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m2_e0 | het | 93.1034 | 90.0000 | 96.4286 | 90.8497 | 27 | 3 | 27 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m2_e1 | het | 93.1034 | 90.0000 | 96.4286 | 91.0256 | 27 | 3 | 27 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 64.2857 | 90.0000 | 50.0000 | 99.5663 | 9 | 1 | 7 | 7 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 92.3077 | 90.0000 | 94.7368 | 99.2146 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | map_l125_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 90.5013 | 36 | 4 | 36 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | C1_5 | * | * | 0.0000 | 90.0000 | 0.0000 | 0.0000 | 9 | 1 | 0 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m2_e0 | * | 89.0110 | 90.0000 | 88.0435 | 93.0983 | 81 | 9 | 81 | 11 | 4 | 36.3636 | |
| egarrison-hhga | SNP | tv | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 82.0000 | 18 | 2 | 18 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 84.6154 | 18 | 2 | 18 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 84.8739 | 18 | 2 | 18 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | * | * | 91.3266 | 90.0000 | 92.6929 | 92.2121 | 9 | 1 | 2499 | 197 | 109 | 55.3299 | |
| egarrison-hhga | SNP | * | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 82.0000 | 18 | 2 | 18 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 84.6154 | 18 | 2 | 18 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 84.8739 | 18 | 2 | 18 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l125_m1_e0 | het | 93.1034 | 90.0000 | 96.4286 | 94.4773 | 27 | 3 | 27 | 1 | 0 | 0.0000 | |