PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50701-50750 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 94.5039 | 89.7494 | 99.7904 | 31.1688 | 394 | 45 | 476 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 87.8228 | 89.7533 | 85.9736 | 75.4953 | 473 | 54 | 521 | 85 | 78 | 91.7647 | |
| asubramanian-gatk | INDEL | D1_5 | map_siren | het | 93.3358 | 89.7672 | 97.1998 | 84.8319 | 2044 | 233 | 2048 | 59 | 5 | 8.4746 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.4040 | 89.7684 | 97.3466 | 51.5533 | 3527 | 402 | 3522 | 96 | 90 | 93.7500 | |
| gduggal-snapplat | SNP | tv | map_l100_m0_e0 | * | 92.3781 | 89.7690 | 95.1434 | 82.0623 | 9950 | 1134 | 9952 | 508 | 276 | 54.3307 | |
| ciseli-custom | INDEL | I1_5 | HG002complexvar | het | 88.5454 | 89.7735 | 87.3504 | 57.1664 | 16328 | 1860 | 16352 | 2368 | 1692 | 71.4527 | |
| jmaeng-gatk | SNP | * | map_siren | * | 94.0415 | 89.7742 | 98.7347 | 67.2383 | 131275 | 14953 | 131252 | 1682 | 121 | 7.1938 | |
| jli-custom | INDEL | I16_PLUS | HG002complexvar | het | 94.3784 | 89.7744 | 99.4801 | 60.9343 | 597 | 68 | 574 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | HG002complexvar | het | 93.9461 | 89.7756 | 98.5230 | 50.1907 | 2801 | 319 | 3602 | 54 | 30 | 55.5556 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 88.3380 | 89.7756 | 86.9458 | 76.1737 | 360 | 41 | 353 | 53 | 41 | 77.3585 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 94.3169 | 89.7764 | 99.3411 | 33.3446 | 6182 | 704 | 1960 | 13 | 13 | 100.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 89.5432 | 89.7781 | 89.3096 | 71.8319 | 3601 | 410 | 3609 | 432 | 17 | 3.9352 | |
| anovak-vg | SNP | ti | map_l150_m2_e1 | het | 76.0299 | 89.7810 | 65.9316 | 81.6800 | 11685 | 1330 | 11600 | 5994 | 1333 | 22.2389 | |
| ciseli-custom | SNP | * | map_l100_m2_e0 | homalt | 90.4763 | 89.7867 | 91.1766 | 62.8157 | 24712 | 2811 | 24604 | 2381 | 1867 | 78.4124 | |
| astatham-gatk | SNP | * | map_l250_m0_e0 | * | 93.8786 | 89.7892 | 98.3581 | 93.7904 | 1917 | 218 | 1917 | 32 | 8 | 25.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 77.9999 | 89.7911 | 68.9460 | 55.2115 | 9974 | 1134 | 10002 | 4505 | 4444 | 98.6459 | |
| jli-custom | INDEL | D1_5 | HG002complexvar | hetalt | 93.0817 | 89.7929 | 96.6206 | 73.4123 | 1214 | 138 | 1258 | 44 | 43 | 97.7273 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.6020 | 89.7937 | 95.5916 | 62.8768 | 1654 | 188 | 1648 | 76 | 46 | 60.5263 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_siren | het | 85.4369 | 89.7959 | 81.4815 | 84.9162 | 44 | 5 | 44 | 10 | 7 | 70.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_siren | het | 92.6316 | 89.7959 | 95.6522 | 77.1144 | 44 | 5 | 44 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.6170 | 89.7959 | 97.7778 | 23.7288 | 44 | 5 | 44 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | segdup | hetalt | 94.6237 | 89.7959 | 100.0000 | 90.1786 | 44 | 5 | 44 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | segdup | hetalt | 94.6237 | 89.7959 | 100.0000 | 90.3720 | 44 | 5 | 44 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 89.7959 | 0.0000 | 0.0000 | 44 | 5 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | segdup | hetalt | 0.0000 | 89.7959 | 0.0000 | 0.0000 | 44 | 5 | 0 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | segdup | hetalt | 94.6237 | 89.7959 | 100.0000 | 90.4968 | 44 | 5 | 44 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 94.6237 | 89.7959 | 100.0000 | 27.8689 | 44 | 5 | 44 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | segdup | hetalt | 94.6237 | 89.7959 | 100.0000 | 90.4968 | 44 | 5 | 44 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | segdup | hetalt | 94.6237 | 89.7959 | 100.0000 | 90.4555 | 44 | 5 | 44 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 94.6237 | 89.7959 | 100.0000 | 25.4237 | 44 | 5 | 44 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 94.6237 | 89.7959 | 100.0000 | 27.8689 | 44 | 5 | 44 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_siren | * | 94.1020 | 89.7981 | 98.8391 | 66.9681 | 131310 | 14918 | 131287 | 1542 | 125 | 8.1064 | |
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 83.1375 | 89.8020 | 77.3938 | 60.0848 | 3628 | 412 | 8600 | 2512 | 1214 | 48.3280 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 93.8149 | 89.8021 | 98.2032 | 50.1554 | 2677 | 304 | 2678 | 49 | 47 | 95.9184 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.9648 | 89.8058 | 96.3542 | 88.3918 | 185 | 21 | 185 | 7 | 3 | 42.8571 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.4984 | 89.8072 | 99.7067 | 47.0497 | 326 | 37 | 340 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 94.4711 | 89.8077 | 99.6454 | 42.6596 | 2802 | 318 | 2810 | 10 | 9 | 90.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 91.7828 | 89.8112 | 93.8428 | 47.3895 | 19983 | 2267 | 20728 | 1360 | 1094 | 80.4412 | |
| jli-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.5415 | 89.8113 | 99.7976 | 44.9275 | 476 | 54 | 493 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_siren | homalt | 94.1879 | 89.8116 | 99.0126 | 74.9663 | 1049 | 119 | 1103 | 11 | 11 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.3859 | 89.8140 | 99.4483 | 30.8646 | 2125 | 241 | 2163 | 12 | 11 | 91.6667 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 93.7007 | 89.8148 | 97.9381 | 75.3181 | 97 | 11 | 95 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 93.7198 | 89.8148 | 97.9798 | 82.7526 | 97 | 11 | 97 | 2 | 0 | 0.0000 | |
| ciseli-custom | SNP | * | map_l100_m2_e1 | homalt | 90.5022 | 89.8151 | 91.2000 | 62.7951 | 24965 | 2831 | 24852 | 2398 | 1881 | 78.4404 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 93.2666 | 89.8204 | 96.9880 | 69.6527 | 150 | 17 | 161 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 80.3030 | 89.8305 | 72.6027 | 74.2049 | 53 | 6 | 53 | 20 | 19 | 95.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m1_e0 | het | 93.8053 | 89.8305 | 98.1481 | 82.8025 | 53 | 6 | 53 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 83.4646 | 89.8305 | 77.9412 | 76.1404 | 53 | 6 | 53 | 15 | 14 | 93.3333 | |
| ciseli-custom | INDEL | I1_5 | func_cds | het | 78.5185 | 89.8305 | 69.7368 | 38.2114 | 53 | 6 | 53 | 23 | 13 | 56.5217 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m1_e0 | het | 90.8495 | 89.8305 | 91.8919 | 87.8289 | 53 | 6 | 68 | 6 | 1 | 16.6667 | |