PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50601-50650 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | het | 85.8721 | 89.5833 | 82.4561 | 89.4834 | 43 | 5 | 47 | 10 | 5 | 50.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 94.5055 | 89.5833 | 100.0000 | 89.0000 | 43 | 5 | 44 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l100_m2_e0 | het | 38.5430 | 89.5833 | 24.5536 | 86.4897 | 43 | 5 | 55 | 169 | 1 | 0.5917 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 86.6965 | 89.5833 | 83.9898 | 89.6733 | 645 | 75 | 661 | 126 | 8 | 6.3492 | |
| gduggal-snapfb | INDEL | I1_5 | segdup | hetalt | 87.9440 | 89.5833 | 86.3636 | 97.6471 | 43 | 5 | 19 | 3 | 1 | 33.3333 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | het | 90.3408 | 89.5833 | 91.1111 | 94.6492 | 43 | 5 | 41 | 4 | 2 | 50.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 94.5055 | 89.5833 | 100.0000 | 90.2655 | 43 | 5 | 44 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | segdup | hetalt | 92.2122 | 89.5833 | 95.0000 | 97.6771 | 43 | 5 | 19 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | ti | HG002compoundhet | het | 78.6871 | 89.5844 | 70.1534 | 57.2786 | 8515 | 990 | 8645 | 3678 | 282 | 7.6672 | |
| qzeng-custom | INDEL | D6_15 | map_siren | * | 82.8301 | 89.5874 | 77.0206 | 83.5033 | 456 | 53 | 486 | 145 | 21 | 14.4828 | |
| qzeng-custom | INDEL | I16_PLUS | * | het | 85.2063 | 89.5879 | 81.2333 | 62.0542 | 2435 | 283 | 2740 | 633 | 156 | 24.6445 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.3139 | 89.5894 | 97.3615 | 44.5095 | 2160 | 251 | 2214 | 60 | 45 | 75.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.1256 | 89.5940 | 96.9471 | 61.4582 | 5450 | 633 | 5335 | 168 | 156 | 92.8571 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 94.3059 | 89.5985 | 99.5353 | 25.4660 | 7253 | 842 | 7283 | 34 | 30 | 88.2353 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 94.5148 | 89.6000 | 100.0000 | 27.8481 | 112 | 13 | 114 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 94.1211 | 89.6000 | 99.1228 | 23.4899 | 112 | 13 | 113 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | * | map_l100_m2_e0 | hetalt | 94.5148 | 89.6000 | 100.0000 | 86.6040 | 112 | 13 | 114 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | HG002complexvar | homalt | 93.6134 | 89.6018 | 98.0010 | 59.6110 | 9496 | 1102 | 9462 | 193 | 170 | 88.0829 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 81.9462 | 89.6097 | 75.4902 | 79.0668 | 1630 | 189 | 1463 | 475 | 410 | 86.3158 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 81.9462 | 89.6097 | 75.4902 | 79.0668 | 1630 | 189 | 1463 | 475 | 410 | 86.3158 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 92.1428 | 89.6098 | 94.8232 | 41.9297 | 32790 | 3802 | 32348 | 1766 | 1366 | 77.3499 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 83.7981 | 89.6100 | 78.6942 | 72.7931 | 5468 | 634 | 5496 | 1488 | 1452 | 97.5806 | |
| gduggal-bwavard | SNP | * | tech_badpromoters | het | 93.2432 | 89.6104 | 97.1831 | 51.0345 | 69 | 8 | 69 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 72.8517 | 89.6171 | 61.3706 | 74.5275 | 1381 | 160 | 1406 | 885 | 863 | 97.5141 | |
| gduggal-bwaplat | INDEL | * | HG002complexvar | homalt | 93.8564 | 89.6215 | 98.5114 | 56.9159 | 24222 | 2805 | 24155 | 365 | 314 | 86.0274 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 91.4755 | 89.6226 | 93.4066 | 86.1280 | 95 | 11 | 85 | 6 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.9985 | 89.6226 | 98.8235 | 85.8333 | 95 | 11 | 84 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m0_e0 | het | 93.5961 | 89.6226 | 97.9381 | 82.0037 | 95 | 11 | 95 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 83.5759 | 89.6241 | 78.2925 | 40.0872 | 1192 | 138 | 1183 | 328 | 283 | 86.2805 | |
| anovak-vg | SNP | ti | map_l150_m1_e0 | het | 75.5864 | 89.6281 | 65.3485 | 80.5450 | 11087 | 1283 | 11006 | 5836 | 1295 | 22.1899 | |
| ciseli-custom | SNP | * | map_l100_m1_e0 | homalt | 90.3629 | 89.6308 | 91.1071 | 60.1980 | 24203 | 2800 | 24096 | 2352 | 1848 | 78.5714 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 92.7431 | 89.6335 | 96.0762 | 74.1823 | 856 | 99 | 857 | 35 | 22 | 62.8571 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.9065 | 89.6373 | 94.2935 | 88.6839 | 346 | 40 | 347 | 21 | 14 | 66.6667 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 90.6418 | 89.6396 | 91.6667 | 81.6483 | 199 | 23 | 198 | 18 | 15 | 83.3333 | |
| ciseli-custom | INDEL | D1_5 | map_siren | homalt | 86.4005 | 89.6404 | 83.3866 | 80.5952 | 1047 | 121 | 1044 | 208 | 167 | 80.2885 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.3126 | 89.6450 | 99.4931 | 30.6266 | 2121 | 245 | 2159 | 11 | 11 | 100.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.4132 | 89.6552 | 97.5000 | 85.0187 | 78 | 9 | 78 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | func_cds | het | 85.5576 | 89.6552 | 81.8182 | 50.0000 | 26 | 3 | 27 | 6 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m2_e0 | * | 93.2735 | 89.6552 | 97.1963 | 85.5014 | 104 | 12 | 104 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m2_e1 | * | 93.2735 | 89.6552 | 97.1963 | 85.8466 | 104 | 12 | 104 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m1_e0 | * | 88.6364 | 89.6552 | 87.6404 | 92.1793 | 78 | 9 | 78 | 11 | 4 | 36.3636 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m0_e0 | het | 94.5455 | 89.6552 | 100.0000 | 88.7931 | 26 | 3 | 26 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l125_m0_e0 | het | 82.5397 | 89.6552 | 76.4706 | 93.3071 | 26 | 3 | 26 | 8 | 8 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 73.6289 | 89.6552 | 62.4633 | 66.7479 | 416 | 48 | 426 | 256 | 253 | 98.8281 | |
| gduggal-bwaplat | INDEL | D6_15 | func_cds | het | 94.5455 | 89.6552 | 100.0000 | 62.8571 | 26 | 3 | 26 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | func_cds | het | 89.8273 | 89.6552 | 90.0000 | 47.3684 | 26 | 3 | 27 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m0_e0 | het | 93.2102 | 89.6552 | 97.0588 | 89.8204 | 26 | 3 | 33 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 92.9548 | 89.6552 | 96.5066 | 51.9916 | 442 | 51 | 442 | 16 | 3 | 18.7500 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | * | 91.2281 | 89.6552 | 92.8571 | 92.4866 | 78 | 9 | 78 | 6 | 2 | 33.3333 | |
| eyeh-varpipe | INDEL | D6_15 | func_cds | het | 89.6552 | 89.6552 | 89.6552 | 38.2979 | 26 | 3 | 26 | 3 | 3 | 100.0000 | |