PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1006 1007 1008 1009 1010 1011 1012 1013 1014 ... 1720 1721 » 50451-50500 / 86044 show all
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	het	45.3799	89.3939	30.4082	52.3346	295	35	298	682	674	98.8270
jpowers-varprowl	INDEL	I1_5	map_l250_m2_e0	het	89.3939	89.3939	89.3939	97.2454	59	7	59	7	3	42.8571
jpowers-varprowl	INDEL	I1_5	map_l250_m2_e1	het	89.3939	89.3939	89.3939	97.3419	59	7	59	7	3	42.8571
ltrigg-rtg2	INDEL	I1_5	map_l250_m2_e0	het	92.9378	89.3939	96.7742	93.0023	59	7	60	2	0	0.0000
ltrigg-rtg2	INDEL	I1_5	map_l250_m2_e1	het	92.9378	89.3939	96.7742	93.3405	59	7	60	2	0	0.0000
ndellapenna-hhga	INDEL	D6_15	map_l100_m2_e0	*	90.3148	89.3939	91.2548	85.9433	236	28	240	23	11	47.8261
ndellapenna-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	87.8527	89.3939	86.3636	84.4706	59	7	57	9	4	44.4444
jli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	94.4000	89.3939	100.0000	85.7855	59	7	57	0	0
ckim-dragen	INDEL	*	map_l100_m2_e1	hetalt	94.4000	89.3939	100.0000	86.3481	118	14	120	0	0
cchapple-custom	INDEL	I1_5	map_l250_m2_e0	het	91.4729	89.3939	93.6508	96.7102	59	7	59	4	0	0.0000
cchapple-custom	INDEL	I1_5	map_l250_m2_e1	het	91.4729	89.3939	93.6508	96.8117	59	7	59	4	0	0.0000
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	93.6508	89.3939	98.3333	77.6536	118	14	118	2	1	50.0000
mlin-fermikit	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	80.6298	89.3985	73.4276	74.6915	1189	141	1039	376	353	93.8830
jlack-gatk	INDEL	*	*	hetalt	94.2358	89.4005	99.6240	58.0561	22562	2675	22786	86	78	90.6977
hfeng-pmm1	SNP	tv	HG002compoundhet	het	94.3861	89.4072	99.9521	52.4903	4178	495	4176	2	2	100.0000
gduggal-bwaplat	SNP	ti	tech_badpromoters	*	93.8272	89.4118	98.7013	57.6923	76	9	76	1	0	0.0000
hfeng-pmm3	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	93.1566	89.4121	97.2284	51.4923	3513	416	3508	100	94	94.0000
jlack-gatk	INDEL	*	HG002compoundhet	hetalt	94.2807	89.4162	99.7049	50.9823	22515	2665	22637	67	62	92.5373
ciseli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	82.4109	89.4163	76.4235	49.0835	3278	388	3248	1002	864	86.2275
ckim-isaac	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	94.3567	89.4171	99.8741	46.5320	1580	187	1586	2	1	50.0000
jpowers-varprowl	INDEL	D1_5	*	homalt	93.6510	89.4228	98.2990	49.9719	43751	5175	43688	756	634	83.8624
ghariani-varprowl	INDEL	D1_5	*	homalt	93.4710	89.4248	97.9006	50.1151	43752	5174	43695	937	631	67.3426
jpowers-varprowl	INDEL	*	map_l250_m2_e0	*	91.3580	89.4260	93.3754	96.4605	296	35	296	21	12	57.1429
anovak-vg	SNP	tv	map_l100_m2_e0	*	83.6288	89.4260	78.5375	71.8835	22386	2647	22351	6108	1319	21.5946
gduggal-snapplat	SNP	tv	map_l150_m2_e1	*	92.0738	89.4279	94.8810	86.0143	10286	1216	10287	555	293	52.7928
ciseli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	86.2310	89.4309	83.2523	73.2130	1210	143	1198	241	178	73.8589
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	94.2919	89.4359	99.7056	40.6868	872	103	1016	3	3	100.0000
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	94.2917	89.4359	99.7050	39.9291	872	103	1014	3	3	100.0000
gduggal-bwafb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	92.3938	89.4378	95.5519	45.2869	12329	1456	13383	623	612	98.2343
mlin-fermikit	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	84.2223	89.4397	79.5802	65.5942	415	49	417	107	106	99.0654
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	93.8486	89.4412	98.7128	45.6849	2465	291	2454	32	30	93.7500
gduggal-snapfb	INDEL	*	map_l150_m0_e0	het	90.4453	89.4428	91.4706	88.9359	305	36	311	29	6	20.6897
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	92.8623	89.4444	96.5517	85.0649	644	76	644	23	10	43.4783
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	87.6321	89.4447	85.8915	75.4124	1627	192	1869	307	263	85.6678
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	87.6321	89.4447	85.8915	75.4124	1627	192	1869	307	263	85.6678
ciseli-custom	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	57.8173	89.4447	42.7138	55.6700	3254	384	3236	4340	4025	92.7419
egarrison-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	93.8528	89.4478	98.7142	36.5693	2365	279	2380	31	29	93.5484
ndellapenna-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	93.7450	89.4498	98.4735	43.0447	3154	372	3161	49	44	89.7959
ndellapenna-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	93.7450	89.4498	98.4735	43.0447	3154	372	3161	49	44	89.7959
mlin-fermikit	INDEL	D6_15	HG002complexvar	*	90.8139	89.4568	92.2128	58.0463	4743	559	4784	404	381	94.3069
qzeng-custom	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	het	85.6204	89.4628	82.0945	59.1015	866	102	2728	595	253	42.5210
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	93.8847	89.4650	98.7637	56.1710	2157	254	2157	27	25	92.5926
jpowers-varprowl	SNP	tv	HG002compoundhet	het	92.4509	89.4714	95.6356	62.4569	4181	492	4273	195	18	9.2308
ltrigg-rtg2	INDEL	D6_15	map_l100_m0_e0	hetalt	94.4444	89.4737	100.0000	85.4701	17	2	17	0	0
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	93.3287	89.4737	97.5309	91.1087	85	10	79	2	0	0.0000
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	92.3674	89.4737	95.4545	87.9781	119	14	105	5	2	40.0000
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	94.4444	89.4737	100.0000	81.2500	17	2	18	0	0
ltrigg-rtg1	INDEL	D6_15	map_l100_m0_e0	hetalt	91.8919	89.4737	94.4444	84.4828	17	2	17	1	1	100.0000
jpowers-varprowl	INDEL	*	map_l250_m1_e0	het	90.4255	89.4737	91.3978	96.9623	170	20	170	16	10	62.5000
hfeng-pmm2	INDEL	D6_15	map_l125_m1_e0	hetalt	94.4444	89.4737	100.0000	85.3448	17	2	17	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge