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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1005 1006 1007 1008 1009 1010 1011 1012 1013 ... 1720 1721 » 50401-50450 / 86044 show all
qzeng-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	82.7253	89.2979	77.0540	68.9962	4464	535	4755	1416	413	29.1667
gduggal-bwavard	INDEL	*	HG002compoundhet	het	23.2106	89.3014	13.3387	58.9532	3656	438	3793	24643	23937	97.1351
gduggal-snapplat	SNP	*	map_l125_m2_e1	homalt	94.3221	89.3053	99.9361	69.8871	15657	1875	15646	10	9	90.0000
gduggal-bwavard	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	82.0661	89.3056	75.9124	88.1111	643	77	624	198	59	29.7980
anovak-vg	SNP	tv	map_l100_m1_e0	*	83.4211	89.3066	78.2634	70.1430	21881	2620	21848	6068	1313	21.6381
gduggal-snapplat	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	86.9120	89.3082	84.6411	75.9718	2272	272	2276	413	12	2.9056
gduggal-snapfb	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	90.8048	89.3111	92.3494	45.1133	3267	391	4092	339	139	41.0029
gduggal-bwafb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	92.2978	89.3146	95.4870	71.2322	5734	686	6813	322	214	66.4596
gduggal-bwafb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	92.2978	89.3146	95.4870	71.2322	5734	686	6813	322	214	66.4596
raldana-dualsentieon	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	92.9293	89.3204	96.8421	87.2226	184	22	184	6	2	33.3333
raldana-dualsentieon	SNP	tv	HG002compoundhet	het	94.2957	89.3216	99.8564	53.2191	4174	499	4172	6	3	50.0000
raldana-dualsentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	93.5294	89.3258	98.1481	70.3839	159	19	159	3	2	66.6667
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	90.1406	89.3302	90.9658	70.1878	5735	685	5689	565	335	59.2920
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	90.1406	89.3302	90.9658	70.1878	5735	685	5689	565	335	59.2920
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	91.8394	89.3309	94.4928	61.1176	5434	649	5319	310	299	96.4516
anovak-vg	SNP	ti	map_siren	homalt	94.0329	89.3343	99.2531	48.3941	33872	4044	33489	252	225	89.2857
gduggal-snapplat	SNP	tv	map_l150_m2_e0	*	92.0132	89.3351	94.8569	86.0094	10144	1211	10144	550	292	53.0909
astatham-gatk	INDEL	I1_5	map_l125_m2_e0	het	93.7725	89.3360	98.6726	89.3947	444	53	446	6	0	0.0000
ckim-isaac	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	92.9113	89.3360	96.7846	77.0025	6149	734	6291	209	19	9.0909
jlack-gatk	INDEL	D6_15	HG002complexvar	hetalt	92.4487	89.3386	95.7831	48.0438	905	108	954	42	37	88.0952
qzeng-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	het	89.2573	89.3506	89.1641	59.4561	344	41	864	105	76	72.3810
raldana-dualsentieon	INDEL	I6_15	HG002compoundhet	*	92.3351	89.3573	95.5182	36.0215	7842	934	7843	368	366	99.4565
raldana-dualsentieon	INDEL	I16_PLUS	HG002compoundhet	het	83.6199	89.3617	78.5714	93.1540	42	5	22	6	6	100.0000
rpoplin-dv42	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	93.0748	89.3617	97.1098	66.2109	168	20	168	5	5	100.0000
raldana-dualsentieon	INDEL	D1_5	map_l100_m1_e0	hetalt	94.3820	89.3617	100.0000	88.8298	42	5	42	0	0
hfeng-pmm3	INDEL	D1_5	map_l100_m1_e0	hetalt	94.3820	89.3617	100.0000	89.9761	42	5	42	0	0
hfeng-pmm1	INDEL	I16_PLUS	HG002compoundhet	het	88.6756	89.3617	88.0000	93.8725	42	5	22	3	2	66.6667
ltrigg-rtg1	INDEL	I16_PLUS	segdup	*	94.3820	89.3617	100.0000	89.7311	42	5	42	0	0
asubramanian-gatk	INDEL	D6_15	map_l125_m0_e0	*	94.3820	89.3617	100.0000	94.9766	42	5	43	0	0
ckim-vqsr	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	*	93.3805	89.3617	97.7778	82.0000	42	5	44	1	1	100.0000
cchapple-custom	INDEL	I16_PLUS	HG002compoundhet	het	93.8692	89.3617	98.8556	50.9675	42	5	2505	29	26	89.6552
gduggal-bwafb	INDEL	D6_15	map_l125_m0_e0	*	92.4000	89.3617	95.6522	92.1098	42	5	44	2	1	50.0000
gduggal-bwaplat	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	homalt	94.3820	89.3617	100.0000	56.7010	42	5	42	0	0
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	93.4634	89.3657	97.9550	62.9826	479	57	479	10	9	90.0000
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	91.8646	89.3667	94.5063	68.0289	2681	319	2632	153	61	39.8693
jpowers-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	90.3658	89.3697	91.3843	78.2572	950	113	944	89	83	93.2584
astatham-gatk	INDEL	I1_5	map_l125_m2_e1	het	93.8042	89.3701	98.7013	89.4569	454	54	456	6	0	0.0000
gduggal-bwavard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	83.2502	89.3757	77.9104	89.9920	816	97	783	222	70	31.5315
ghariani-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	58.3357	89.3782	43.2977	89.0534	345	41	365	478	34	7.1130
ghariani-varprowl	INDEL	*	func_cds	homalt	93.7355	89.3805	98.5366	32.5658	202	24	202	3	1	33.3333
jpowers-varprowl	INDEL	*	func_cds	homalt	94.1725	89.3805	99.5074	31.4189	202	24	202	1	1	100.0000
egarrison-hhga	INDEL	I16_PLUS	HG002complexvar	*	92.4901	89.3812	95.8231	64.9842	1170	139	1170	51	30	58.8235
ltrigg-rtg2	INDEL	D16_PLUS	HG002compoundhet	het	93.5628	89.3827	98.1530	48.0110	362	43	372	7	7	100.0000
anovak-vg	INDEL	D1_5	map_siren	homalt	92.1020	89.3836	94.9909	79.6667	1044	124	1043	55	46	83.6364
gduggal-snapvard	INDEL	D1_5	map_siren	homalt	93.2963	89.3836	97.5673	70.4493	1044	124	1123	28	26	92.8571
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	*	91.7813	89.3878	94.3066	53.8721	657	78	646	39	38	97.4359
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	*	91.7813	89.3878	94.3066	53.8098	657	78	646	39	38	97.4359
gduggal-bwavard	INDEL	D1_5	*	*	90.6910	89.3918	92.0286	58.1851	131178	15567	129649	11230	9891	88.0766
gduggal-snapvard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	71.3469	89.3925	59.3632	66.7339	5739	681	11355	7773	6089	78.3353
gduggal-snapvard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	71.3469	89.3925	59.3632	66.7339	5739	681	11355	7773	6089	78.3353

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