PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50151-50200 / 86044 show all | |||||||||||||||
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.1176 | 88.8889 | 100.0000 | 95.1220 | 8 | 1 | 8 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 94.0299 | 8 | 1 | 8 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | C1_5 | * | het | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l150_m2_e1 | * | 86.4865 | 88.8889 | 84.2105 | 95.2141 | 16 | 2 | 16 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | func_cds | het | 94.1176 | 88.8889 | 100.0000 | 57.8947 | 8 | 1 | 8 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m1_e0 | het | 94.1176 | 88.8889 | 100.0000 | 90.6977 | 16 | 2 | 16 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m2_e0 | het | 94.1176 | 88.8889 | 100.0000 | 92.3810 | 16 | 2 | 16 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m2_e1 | het | 94.1176 | 88.8889 | 100.0000 | 92.4528 | 16 | 2 | 16 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m1_e0 | het | 94.1176 | 88.8889 | 100.0000 | 92.9825 | 8 | 1 | 8 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m2_e0 | het | 94.1176 | 88.8889 | 100.0000 | 94.4828 | 8 | 1 | 8 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m2_e1 | het | 94.1176 | 88.8889 | 100.0000 | 94.5205 | 8 | 1 | 8 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 92.0548 | 88.8889 | 95.4545 | 78.8462 | 256 | 32 | 231 | 11 | 8 | 72.7273 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 93.2203 | 8 | 1 | 8 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 94.4828 | 8 | 1 | 8 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 95.2663 | 8 | 1 | 8 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.1176 | 88.8889 | 100.0000 | 95.6522 | 8 | 1 | 8 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.1176 | 88.8889 | 100.0000 | 95.3216 | 8 | 1 | 8 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l150_m2_e1 | * | 64.0000 | 88.8889 | 50.0000 | 97.5719 | 16 | 2 | 19 | 19 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D1_5 | map_siren | het | 92.9621 | 88.8889 | 97.4265 | 85.9785 | 2024 | 253 | 2120 | 56 | 32 | 57.1429 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m1_e0 | het | 78.1102 | 88.8889 | 69.6629 | 87.0262 | 112 | 14 | 186 | 81 | 8 | 9.8765 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m2_e1 | het | 78.1655 | 88.8889 | 69.7509 | 87.5883 | 120 | 15 | 196 | 85 | 9 | 10.5882 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m1_e0 | het | 84.2105 | 88.8889 | 80.0000 | 89.9497 | 8 | 1 | 16 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m2_e0 | het | 80.0000 | 88.8889 | 72.7273 | 89.8618 | 8 | 1 | 16 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m2_e1 | het | 80.0000 | 88.8889 | 72.7273 | 89.9083 | 8 | 1 | 16 | 6 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.1176 | 88.8889 | 100.0000 | 96.1353 | 8 | 1 | 8 | 0 | 0 | ||
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.1176 | 88.8889 | 100.0000 | 96.9697 | 8 | 1 | 8 | 0 | 0 | ||
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 84.4800 | 88.8889 | 80.4878 | 90.5747 | 32 | 4 | 33 | 8 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 96.5278 | 8 | 1 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m0_e0 | het | 88.8889 | 88.8889 | 88.8889 | 88.4615 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m2_e1 | * | 91.4286 | 88.8889 | 94.1176 | 90.7609 | 16 | 2 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | segdup | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.6606 | 8 | 1 | 8 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | tech_badpromoters | homalt | 94.1176 | 88.8889 | 100.0000 | 27.2727 | 8 | 1 | 8 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 88.8889 | 88.8889 | 88.8889 | 99.5220 | 8 | 1 | 8 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.8571 | 8 | 1 | 8 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | func_cds | het | 94.1176 | 88.8889 | 100.0000 | 42.8571 | 8 | 1 | 8 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 93.7591 | 40 | 5 | 43 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.1176 | 88.8889 | 100.0000 | 94.9640 | 8 | 1 | 7 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.1176 | 88.8889 | 100.0000 | 95.5801 | 8 | 1 | 8 | 0 | 0 | ||
| jpowers-varprowl | INDEL | C1_5 | * | het | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l100_m2_e1 | het | 73.3945 | 88.8889 | 62.5000 | 87.0095 | 120 | 15 | 120 | 72 | 69 | 95.8333 | |
| jmaeng-gatk | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 95.6757 | 8 | 1 | 8 | 0 | 0 | ||
| jmaeng-gatk | INDEL | C1_5 | * | het | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | * | het | 89.8401 | 88.8889 | 90.8120 | 96.3931 | 8 | 1 | 425 | 43 | 1 | 2.3256 | |
| ltrigg-rtg1 | INDEL | D1_5 | tech_badpromoters | homalt | 94.1176 | 88.8889 | 100.0000 | 27.2727 | 8 | 1 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 88.8889 | 88.8889 | 88.8889 | 99.4678 | 8 | 1 | 8 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.6606 | 8 | 1 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | func_cds | het | 94.1176 | 88.8889 | 100.0000 | 42.8571 | 8 | 1 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 93.0988 | 88.8889 | 97.7273 | 93.3333 | 40 | 5 | 43 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.8571 | 8 | 1 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_siren | hetalt | 94.1176 | 88.8889 | 100.0000 | 80.5970 | 64 | 8 | 65 | 0 | 0 | ||