PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50051-50100 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | I6_15 | map_l125_m0_e0 | het | 57.1429 | 88.8889 | 42.1053 | 92.5490 | 8 | 1 | 8 | 11 | 4 | 36.3636 | |
| gduggal-bwavard | INDEL | C1_5 | * | het | 77.2653 | 88.8889 | 68.3301 | 92.9553 | 8 | 1 | 1068 | 495 | 105 | 21.2121 | |
| gduggal-bwavard | INDEL | D16_PLUS | HG002complexvar | het | 81.5892 | 88.8889 | 75.3974 | 65.5091 | 984 | 123 | 996 | 325 | 263 | 80.9231 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m0_e0 | het | 69.5652 | 88.8889 | 57.1429 | 96.0114 | 8 | 1 | 8 | 6 | 1 | 16.6667 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m1_e0 | * | 92.1466 | 88.8889 | 95.6522 | 95.5684 | 16 | 2 | 22 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 91.9192 | 8 | 1 | 8 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.1176 | 88.8889 | 100.0000 | 96.4602 | 8 | 1 | 8 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | C1_5 | * | het | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.6606 | 8 | 1 | 8 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | * | 90.3955 | 88.8889 | 91.9540 | 93.3231 | 80 | 10 | 80 | 7 | 2 | 28.5714 | |
| jli-custom | INDEL | D16_PLUS | segdup | hetalt | 94.1176 | 88.8889 | 100.0000 | 91.8033 | 8 | 1 | 10 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.4528 | 8 | 1 | 8 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l125_m1_e0 | het | 88.8889 | 88.8889 | 88.8889 | 91.6667 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l125_m2_e0 | het | 88.8889 | 88.8889 | 88.8889 | 93.0233 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l125_m2_e1 | het | 88.8889 | 88.8889 | 88.8889 | 93.0233 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e1 | * | 86.4865 | 88.8889 | 84.2105 | 95.8785 | 16 | 2 | 16 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 91.4894 | 8 | 1 | 8 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.1176 | 88.8889 | 100.0000 | 96.2617 | 8 | 1 | 8 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 93.8877 | 88.8889 | 99.4823 | 87.1394 | 1152 | 144 | 1153 | 6 | 1 | 16.6667 | |
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.1176 | 88.8889 | 100.0000 | 95.8333 | 8 | 1 | 8 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | C1_5 | * | het | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l150_m2_e1 | * | 87.2727 | 88.8889 | 85.7143 | 96.1433 | 24 | 3 | 24 | 4 | 0 | 0.0000 | |
| jlack-gatk | SNP | * | map_l125_m0_e0 | hetalt | 84.2105 | 88.8889 | 80.0000 | 90.9910 | 8 | 1 | 8 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.1176 | 88.8889 | 100.0000 | 95.4802 | 8 | 1 | 8 | 0 | 0 | ||
| jlack-gatk | SNP | tv | map_l125_m0_e0 | hetalt | 84.2105 | 88.8889 | 80.0000 | 90.9910 | 8 | 1 | 8 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 95.5556 | 8 | 1 | 8 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.1176 | 88.8889 | 100.0000 | 94.4056 | 8 | 1 | 8 | 0 | 0 | ||
| jlack-gatk | INDEL | C1_5 | * | het | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 94.1176 | 88.8889 | 100.0000 | 91.0112 | 8 | 1 | 8 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | * | 84.2105 | 88.8889 | 80.0000 | 97.5124 | 16 | 2 | 16 | 4 | 1 | 25.0000 | |
| ckim-gatk | INDEL | C1_5 | * | het | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.9825 | 8 | 1 | 8 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 81.3559 | 88.8889 | 75.0000 | 96.7742 | 24 | 3 | 3 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 71.4286 | 88.8889 | 59.7015 | 47.6562 | 40 | 5 | 40 | 27 | 26 | 96.2963 | |
| ciseli-custom | INDEL | D1_5 | tech_badpromoters | homalt | 88.8889 | 88.8889 | 88.8889 | 50.0000 | 8 | 1 | 8 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I1_5 | func_cds | * | 86.4865 | 88.8889 | 84.2105 | 28.0303 | 160 | 20 | 160 | 30 | 19 | 63.3333 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 88.8889 | 0.0000 | 98.2456 | 8 | 1 | 0 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m0_e0 | het | 84.2105 | 88.8889 | 80.0000 | 96.2264 | 8 | 1 | 8 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l250_m1_e0 | * | 91.4286 | 88.8889 | 94.1176 | 97.0690 | 16 | 2 | 16 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 93.3333 | 8 | 1 | 8 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 95.0311 | 8 | 1 | 8 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 95.7672 | 8 | 1 | 8 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 88.8889 | 100.0000 | 8 | 1 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I6_15 | map_l125_m0_e0 | het | 94.1176 | 88.8889 | 100.0000 | 95.6284 | 8 | 1 | 8 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 95.4286 | 8 | 1 | 8 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | * | het | 91.7367 | 88.8889 | 94.7731 | 92.2595 | 8 | 1 | 1650 | 91 | 24 | 26.3736 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l150_m2_e1 | * | 86.4865 | 88.8889 | 84.2105 | 95.5399 | 16 | 2 | 16 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||