PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49701-49750 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D6_15 | map_l100_m2_e0 | het | 63.7616 | 64.8855 | 62.6761 | 90.4313 | 85 | 46 | 89 | 53 | 13 | 24.5283 | |
| anovak-vg | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 55.4286 | 49.6853 | 62.6733 | 53.8178 | 7973 | 8074 | 8093 | 4820 | 3647 | 75.6639 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 52.1835 | 44.7148 | 62.6476 | 54.5878 | 2720 | 3363 | 3237 | 1930 | 985 | 51.0363 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 56.0188 | 50.6667 | 62.6353 | 47.3349 | 532 | 518 | 984 | 587 | 499 | 85.0085 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 66.9020 | 71.8258 | 62.6099 | 52.3713 | 1963 | 770 | 2207 | 1318 | 760 | 57.6631 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 58.0405 | 54.1246 | 62.5672 | 55.8642 | 35371 | 29980 | 43558 | 26060 | 19700 | 75.5948 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 58.0405 | 54.1246 | 62.5672 | 55.8642 | 35371 | 29980 | 43558 | 26060 | 19700 | 75.5948 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.0377 | 70.0000 | 62.5000 | 99.5059 | 7 | 3 | 5 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 62.5000 | 92.0000 | 0 | 0 | 5 | 3 | 1 | 33.3333 | |
| anovak-vg | INDEL | D16_PLUS | map_l125_m0_e0 | * | 50.0000 | 41.6667 | 62.5000 | 94.2857 | 5 | 7 | 5 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l125_m0_e0 | het | 58.8235 | 55.5556 | 62.5000 | 91.8367 | 5 | 4 | 5 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | I6_15 | map_l125_m0_e0 | het | 51.9481 | 44.4444 | 62.5000 | 88.7324 | 4 | 5 | 10 | 6 | 1 | 16.6667 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 62.5000 | 62.5000 | 62.5000 | 94.8718 | 5 | 3 | 5 | 3 | 2 | 66.6667 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 76.9231 | 100.0000 | 62.5000 | 94.2721 | 15 | 0 | 15 | 9 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 76.9231 | 100.0000 | 62.5000 | 69.2308 | 5 | 0 | 5 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 76.9231 | 100.0000 | 62.5000 | 60.0000 | 5 | 0 | 5 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m2_e1 | het | 63.0961 | 63.7037 | 62.5000 | 90.4573 | 86 | 49 | 90 | 54 | 13 | 24.0741 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m0_e0 | het | 55.5556 | 50.0000 | 62.5000 | 96.8317 | 10 | 10 | 10 | 6 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m1_e0 | homalt | 68.9655 | 76.9231 | 62.5000 | 90.7781 | 20 | 6 | 20 | 12 | 10 | 83.3333 | |
| ciseli-custom | INDEL | D6_15 | tech_badpromoters | homalt | 71.4286 | 83.3333 | 62.5000 | 46.6667 | 5 | 1 | 5 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m0_e0 | * | 24.3902 | 15.1515 | 62.5000 | 94.2446 | 5 | 28 | 5 | 3 | 2 | 66.6667 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 71.4286 | 83.3333 | 62.5000 | 85.1852 | 10 | 2 | 10 | 6 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 71.4286 | 83.3333 | 62.5000 | 85.1852 | 10 | 2 | 10 | 6 | 0 | 0.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 62.5000 | 87.0968 | 0 | 1 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 62.5000 | 87.0968 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 62.5000 | 81.3953 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 62.5000 | 81.3953 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 62.5000 | 78.3784 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 62.5000 | 78.3784 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 62.5000 | 82.2222 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 62.5000 | 82.2222 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 62.5000 | 87.0968 | 0 | 1 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 62.5000 | 87.0968 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 62.5000 | 94.5946 | 0 | 0 | 10 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 60.6061 | 58.8235 | 62.5000 | 99.5311 | 10 | 7 | 10 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | * | map_l250_m2_e0 | het | 58.1040 | 54.2857 | 62.5000 | 97.7123 | 114 | 96 | 115 | 69 | 33 | 47.8261 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 62.5000 | 98.2759 | 0 | 0 | 5 | 3 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m2_e1 | het | 69.5652 | 78.4314 | 62.5000 | 95.0349 | 40 | 11 | 40 | 24 | 21 | 87.5000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l100_m2_e1 | het | 73.3945 | 88.8889 | 62.5000 | 87.0095 | 120 | 15 | 120 | 72 | 69 | 95.8333 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m1_e0 | * | 52.6316 | 45.4545 | 62.5000 | 84.3137 | 5 | 6 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m1_e0 | het | 71.4286 | 83.3333 | 62.5000 | 81.3953 | 5 | 1 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m2_e0 | * | 52.6316 | 45.4545 | 62.5000 | 86.2069 | 5 | 6 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m2_e0 | het | 71.4286 | 83.3333 | 62.5000 | 83.3333 | 5 | 1 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m2_e1 | * | 52.6316 | 45.4545 | 62.5000 | 86.2069 | 5 | 6 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m2_e1 | het | 71.4286 | 83.3333 | 62.5000 | 83.3333 | 5 | 1 | 5 | 3 | 3 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 62.5000 | 90.2439 | 0 | 1 | 5 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m0_e0 | homalt | 50.0000 | 41.6667 | 62.5000 | 87.6923 | 5 | 7 | 5 | 3 | 3 | 100.0000 | |
| qzeng-custom | INDEL | * | decoy | het | 76.9231 | 100.0000 | 62.5000 | 99.9645 | 6 | 0 | 5 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 62.5000 | 96.4758 | 0 | 0 | 5 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 62.5000 | 95.9184 | 0 | 0 | 5 | 3 | 0 | 0.0000 | |