PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49651-49700 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 63.0435 | 97.3364 | 0 | 1 | 29 | 17 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 63.0435 | 97.3364 | 0 | 1 | 29 | 17 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 53.6328 | 46.6667 | 63.0435 | 33.0909 | 21 | 24 | 116 | 68 | 67 | 98.5294 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 49.1489 | 40.2731 | 63.0429 | 36.1826 | 2389 | 3543 | 4848 | 2842 | 2348 | 82.6179 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 62.0379 | 61.0660 | 63.0412 | 57.2267 | 527 | 336 | 597 | 350 | 266 | 76.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 64.3466 | 65.7191 | 63.0303 | 66.4559 | 10565 | 5511 | 13341 | 7825 | 6132 | 78.3642 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 64.3466 | 65.7191 | 63.0303 | 66.4559 | 10565 | 5511 | 13341 | 7825 | 6132 | 78.3642 | |
| anovak-vg | INDEL | * | * | homalt | 74.8405 | 92.1212 | 63.0190 | 50.1342 | 115310 | 9862 | 117434 | 68913 | 64807 | 94.0418 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 73.8152 | 89.0909 | 63.0112 | 55.9378 | 343 | 42 | 339 | 199 | 180 | 90.4523 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 56.5143 | 51.2341 | 63.0078 | 48.1760 | 4878 | 4643 | 6033 | 3542 | 2746 | 77.5268 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 74.3677 | 90.7279 | 63.0063 | 70.4907 | 2231 | 228 | 2209 | 1297 | 1197 | 92.2899 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 75.6798 | 94.7674 | 62.9921 | 72.8632 | 163 | 9 | 160 | 94 | 2 | 2.1277 | |
| anovak-vg | INDEL | I6_15 | map_l150_m1_e0 | * | 61.4458 | 60.0000 | 62.9630 | 91.0299 | 15 | 10 | 17 | 10 | 2 | 20.0000 | |
| anovak-vg | INDEL | I6_15 | map_l150_m2_e0 | * | 61.4458 | 60.0000 | 62.9630 | 92.1283 | 15 | 10 | 17 | 10 | 2 | 20.0000 | |
| ghariani-varprowl | INDEL | * | map_l250_m0_e0 | het | 76.1194 | 96.2264 | 62.9630 | 98.4033 | 51 | 2 | 51 | 30 | 3 | 10.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m0_e0 | het | 58.7127 | 55.0000 | 62.9630 | 92.9412 | 33 | 27 | 34 | 20 | 4 | 20.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 73.3373 | 87.8049 | 62.9630 | 84.4380 | 36 | 5 | 34 | 20 | 7 | 35.0000 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 50.2462 | 41.8069 | 62.9545 | 59.3735 | 2684 | 3736 | 6614 | 3892 | 2524 | 64.8510 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 50.2462 | 41.8069 | 62.9545 | 59.3735 | 2684 | 3736 | 6614 | 3892 | 2524 | 64.8510 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 50.2628 | 41.8345 | 62.9440 | 73.1508 | 18129 | 25206 | 21603 | 12718 | 4309 | 33.8811 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 48.4670 | 39.4052 | 62.9412 | 75.7489 | 106 | 163 | 107 | 63 | 60 | 95.2381 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 43.2760 | 32.9738 | 62.9412 | 68.5185 | 214 | 435 | 214 | 126 | 91 | 72.2222 | |
| gduggal-bwavard | INDEL | * | map_l250_m0_e0 | * | 75.2577 | 93.5897 | 62.9310 | 97.7692 | 73 | 5 | 73 | 43 | 2 | 4.6512 | |
| gduggal-snapvard | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 75.3664 | 93.9516 | 62.9198 | 85.7017 | 932 | 60 | 918 | 541 | 10 | 1.8484 | |
| qzeng-custom | INDEL | I6_15 | map_siren | * | 71.0638 | 81.6393 | 62.9139 | 77.5520 | 249 | 56 | 285 | 168 | 8 | 4.7619 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 75.7282 | 95.1220 | 62.9032 | 93.1188 | 39 | 2 | 39 | 23 | 11 | 47.8261 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 58.9492 | 55.4636 | 62.9024 | 64.8301 | 17420 | 13988 | 17390 | 10256 | 9749 | 95.0566 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 58.9492 | 55.4636 | 62.9024 | 64.8301 | 17420 | 13988 | 17390 | 10256 | 9749 | 95.0566 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 55.8292 | 50.1922 | 62.8926 | 42.4297 | 6919 | 6866 | 6849 | 4041 | 3720 | 92.0564 | |
| ciseli-custom | INDEL | D6_15 | * | * | 61.9102 | 60.9636 | 62.8867 | 53.8982 | 15906 | 10185 | 15938 | 9406 | 6255 | 66.5001 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 34.6127 | 23.8776 | 62.8853 | 50.2149 | 117 | 373 | 510 | 301 | 47 | 15.6146 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 58.2911 | 54.3260 | 62.8805 | 55.6252 | 2003 | 1684 | 2004 | 1183 | 1139 | 96.2806 | |
| ciseli-custom | INDEL | D6_15 | map_siren | * | 62.3762 | 61.8861 | 62.8743 | 84.5131 | 315 | 194 | 315 | 186 | 97 | 52.1505 | |
| ciseli-custom | INDEL | I6_15 | * | * | 35.4599 | 24.6948 | 62.8636 | 46.3768 | 6130 | 18693 | 6094 | 3600 | 3400 | 94.4444 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 62.8571 | 79.8851 | 0 | 0 | 22 | 13 | 2 | 15.3846 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 56.1720 | 50.7947 | 62.8225 | 45.1920 | 7510 | 7275 | 7523 | 4452 | 4009 | 90.0494 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 47.5294 | 38.2286 | 62.8109 | 62.6047 | 505 | 816 | 505 | 299 | 296 | 98.9967 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 60.8792 | 59.0648 | 62.8085 | 52.6630 | 21613 | 14979 | 21581 | 12779 | 12331 | 96.4942 | |
| egarrison-hhga | INDEL | D1_5 | HG002compoundhet | homalt | 76.1097 | 96.5636 | 62.8062 | 73.3847 | 281 | 10 | 282 | 167 | 153 | 91.6168 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 33.4409 | 22.7870 | 62.8044 | 47.2074 | 260 | 881 | 748 | 443 | 442 | 99.7743 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 33.0066 | 22.3881 | 62.7851 | 75.4350 | 540 | 1872 | 523 | 310 | 285 | 91.9355 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 62.7778 | 95.6793 | 0 | 0 | 113 | 67 | 49 | 73.1343 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 62.7586 | 94.9565 | 0 | 0 | 91 | 54 | 38 | 70.3704 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 72.0662 | 84.6154 | 62.7586 | 92.3219 | 187 | 34 | 182 | 108 | 16 | 14.8148 | |
| ciseli-custom | INDEL | I1_5 | map_l125_m2_e1 | het | 64.8655 | 67.1260 | 62.7523 | 89.2822 | 341 | 167 | 342 | 203 | 175 | 86.2069 | |
| anovak-vg | INDEL | I6_15 | map_l100_m1_e0 | het | 45.4208 | 35.5932 | 62.7451 | 82.9431 | 21 | 38 | 32 | 19 | 5 | 26.3158 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_siren | het | 72.9591 | 87.1795 | 62.7273 | 93.3775 | 68 | 10 | 69 | 41 | 36 | 87.8049 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m1_e0 | het | 70.4762 | 80.4348 | 62.7119 | 95.1199 | 37 | 9 | 37 | 22 | 19 | 86.3636 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 23.2024 | 14.2344 | 62.7119 | 73.6999 | 119 | 717 | 111 | 66 | 9 | 13.6364 | |
| ciseli-custom | INDEL | * | tech_badpromoters | * | 58.7413 | 55.2632 | 62.6866 | 50.3704 | 42 | 34 | 42 | 25 | 17 | 68.0000 | |