PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4901-4950 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | * | map_l125_m0_e0 | hetalt | 62.5000 | 45.4545 | 100.0000 | 98.8399 | 5 | 6 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l125_m0_e0 | homalt | 63.7890 | 46.8310 | 100.0000 | 93.6576 | 133 | 151 | 133 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l125_m1_e0 | hetalt | 73.0159 | 57.5000 | 100.0000 | 97.2121 | 23 | 17 | 23 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l125_m1_e0 | homalt | 70.5570 | 54.5082 | 100.0000 | 91.1628 | 399 | 333 | 399 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l125_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 97.4249 | 24 | 18 | 24 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l125_m2_e0 | homalt | 71.3322 | 55.4391 | 100.0000 | 91.6370 | 423 | 340 | 423 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l125_m2_e1 | hetalt | 71.6418 | 55.8140 | 100.0000 | 97.4737 | 24 | 19 | 24 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l125_m2_e1 | homalt | 71.4286 | 55.5556 | 100.0000 | 91.6796 | 430 | 344 | 430 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.1453 | 3 | 6 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l150_m0_e0 | homalt | 57.3913 | 40.2439 | 100.0000 | 96.0667 | 66 | 98 | 66 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l150_m1_e0 | hetalt | 64.5161 | 47.6190 | 100.0000 | 98.4615 | 10 | 11 | 10 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l150_m1_e0 | homalt | 64.3172 | 47.4026 | 100.0000 | 93.7819 | 219 | 243 | 219 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l150_m2_e0 | hetalt | 64.5161 | 47.6190 | 100.0000 | 98.6431 | 10 | 11 | 10 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l150_m2_e0 | homalt | 65.0771 | 48.2328 | 100.0000 | 94.2130 | 232 | 249 | 232 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l150_m2_e1 | hetalt | 64.7059 | 47.8261 | 100.0000 | 98.5430 | 11 | 12 | 11 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l150_m2_e1 | homalt | 65.5738 | 48.7805 | 100.0000 | 94.1449 | 240 | 252 | 240 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m0_e0 | * | 47.0588 | 30.7692 | 100.0000 | 99.5667 | 24 | 54 | 24 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m0_e0 | het | 50.7042 | 33.9623 | 100.0000 | 99.5919 | 18 | 35 | 18 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m0_e0 | homalt | 38.7097 | 24.0000 | 100.0000 | 99.3555 | 6 | 19 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m1_e0 | * | 56.4706 | 39.3443 | 100.0000 | 98.8721 | 120 | 185 | 120 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m1_e0 | het | 58.7361 | 41.5789 | 100.0000 | 99.0493 | 79 | 111 | 79 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.4937 | 2 | 4 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m1_e0 | homalt | 52.7027 | 35.7798 | 100.0000 | 97.9835 | 39 | 70 | 39 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m2_e0 | * | 58.5470 | 41.3897 | 100.0000 | 98.8731 | 137 | 194 | 137 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m2_e0 | het | 60.4651 | 43.3333 | 100.0000 | 99.0381 | 91 | 119 | 91 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.5680 | 2 | 4 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m2_e0 | homalt | 55.3459 | 38.2609 | 100.0000 | 98.0304 | 44 | 71 | 44 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m2_e1 | * | 58.8983 | 41.7417 | 100.0000 | 98.8871 | 139 | 194 | 139 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m2_e1 | het | 60.7261 | 43.6019 | 100.0000 | 99.0542 | 92 | 119 | 92 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m2_e1 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.5763 | 2 | 4 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m2_e1 | homalt | 55.9006 | 38.7931 | 100.0000 | 98.0358 | 45 | 71 | 45 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9980 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9973 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | tech_badpromoters | * | 75.4098 | 60.5263 | 100.0000 | 71.4286 | 46 | 30 | 46 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | tech_badpromoters | het | 80.0000 | 66.6667 | 100.0000 | 72.3404 | 26 | 13 | 26 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | tech_badpromoters | hetalt | 66.6667 | 50.0000 | 100.0000 | 71.4286 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | tech_badpromoters | homalt | 70.5882 | 54.5455 | 100.0000 | 70.0000 | 18 | 15 | 18 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | decoy | * | 85.7143 | 75.0000 | 100.0000 | 99.9740 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9810 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9047 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | func_cds | homalt | 94.2857 | 89.1892 | 100.0000 | 22.3529 | 66 | 8 | 66 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.6441 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.6324 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 94.2693 | 89.1599 | 100.0000 | 66.4495 | 329 | 40 | 309 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.8636 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.7342 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9800 | 0 | 0 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l250_m0_e0 | homalt | 91.6667 | 84.6154 | 100.0000 | 96.9188 | 11 | 2 | 11 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l250_m1_e0 | homalt | 97.2973 | 94.7368 | 100.0000 | 92.3865 | 54 | 3 | 52 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e0 | homalt | 97.4359 | 95.0000 | 100.0000 | 92.9124 | 57 | 3 | 55 | 0 | 0 | ||