PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49001-49050 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 80.0000 | 100.0000 | 66.6667 | 98.0645 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 80.0000 | 100.0000 | 66.6667 | 98.0392 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 98.2857 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| jlack-gatk | SNP | ti | segdup | hetalt | 80.0000 | 100.0000 | 66.6667 | 98.9324 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 70.5882 | 75.0000 | 66.6667 | 99.4646 | 9 | 3 | 6 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 66.6667 | 91.1765 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l250_m1_e0 | * | 57.1429 | 50.0000 | 66.6667 | 97.2477 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l250_m1_e0 | het | 66.6667 | 66.6667 | 66.6667 | 96.0526 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l250_m2_e0 | het | 66.6667 | 66.6667 | 66.6667 | 96.2500 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l250_m2_e1 | het | 66.6667 | 66.6667 | 66.6667 | 96.3415 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | decoy | homalt | 80.0000 | 100.0000 | 66.6667 | 99.8399 | 1 | 0 | 2 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 65.1163 | 63.6364 | 66.6667 | 99.3328 | 7 | 4 | 6 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 63.1579 | 60.0000 | 66.6667 | 99.3066 | 6 | 4 | 6 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | tech_badpromoters | homalt | 66.6667 | 66.6667 | 66.6667 | 50.0000 | 4 | 2 | 4 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | func_cds | * | 44.4444 | 33.3333 | 66.6667 | 50.0000 | 4 | 8 | 4 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 70.5882 | 75.0000 | 66.6667 | 35.7143 | 6 | 2 | 6 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | I1_5 | func_cds | het | 53.0612 | 44.0678 | 66.6667 | 45.0704 | 26 | 33 | 26 | 13 | 3 | 23.0769 | |
| anovak-vg | INDEL | I6_15 | map_l100_m0_e0 | * | 61.7886 | 57.5758 | 66.6667 | 85.3933 | 19 | 14 | 26 | 13 | 6 | 46.1538 | |
| anovak-vg | INDEL | I6_15 | map_l125_m0_e0 | * | 63.1579 | 60.0000 | 66.6667 | 88.4615 | 9 | 6 | 16 | 8 | 3 | 37.5000 | |
| anovak-vg | INDEL | I6_15 | map_l125_m1_e0 | * | 63.3663 | 60.3774 | 66.6667 | 86.5079 | 32 | 21 | 34 | 17 | 6 | 35.2941 | |
| anovak-vg | INDEL | I6_15 | map_l125_m2_e0 | * | 63.3663 | 60.3774 | 66.6667 | 88.0282 | 32 | 21 | 34 | 17 | 6 | 35.2941 | |
| anovak-vg | INDEL | I6_15 | map_l125_m2_e1 | * | 63.3663 | 60.3774 | 66.6667 | 88.3295 | 32 | 21 | 34 | 17 | 6 | 35.2941 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 66.6667 | 66.6667 | 95.5556 | 4 | 2 | 4 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 77.5406 | 92.6531 | 66.6667 | 80.5140 | 454 | 36 | 278 | 139 | 134 | 96.4029 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | * | 57.1429 | 50.0000 | 66.6667 | 98.9761 | 2 | 2 | 2 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | het | 66.6667 | 66.6667 | 66.6667 | 98.6425 | 2 | 1 | 2 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | het | 66.6667 | 66.6667 | 66.6667 | 98.8930 | 2 | 1 | 2 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | het | 66.6667 | 66.6667 | 66.6667 | 98.9091 | 2 | 1 | 2 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 98.2759 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 98.0392 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m0_e0 | * | 80.0000 | 100.0000 | 66.6667 | 97.7186 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 97.5806 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 91.1765 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 66.6667 | 97.4138 | 0 | 0 | 10 | 5 | 4 | 80.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 66.6667 | 92.8571 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 66.6667 | 97.4271 | 0 | 0 | 10 | 5 | 4 | 80.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 66.6667 | 97.4138 | 0 | 0 | 10 | 5 | 4 | 80.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 96.0526 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 80.0000 | 100.0000 | 66.6667 | 98.5149 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 80.0000 | 100.0000 | 66.6667 | 98.5000 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.3333 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.4138 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l250_m1_e0 | * | 80.0000 | 100.0000 | 66.6667 | 97.4249 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | * | 80.0000 | 100.0000 | 66.6667 | 97.5806 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 98.2558 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 98.0132 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | * | 80.0000 | 100.0000 | 66.6667 | 97.7778 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 97.7273 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 91.6667 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 95.9459 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |