PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4851-4900 / 86044 show all | |||||||||||||||
| gduggal-bwafb | SNP | ti | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.0952 | 5 | 0 | 5 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_siren | hetalt | 99.1150 | 98.2456 | 100.0000 | 70.8333 | 56 | 1 | 56 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.1736 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 46.0526 | 41 | 0 | 41 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 10 | 0 | 10 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 28.0101 | 1704 | 0 | 1704 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.8525 | 15 | 0 | 15 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.7917 | 99.5842 | 100.0000 | 59.1297 | 479 | 2 | 479 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.4737 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1039 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.8525 | 15 | 0 | 15 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.2609 | 5 | 0 | 5 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9237 | 99.8474 | 100.0000 | 38.6097 | 1309 | 2 | 1307 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.9524 | 16 | 0 | 16 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l100_m1_e0 | hetalt | 98.7654 | 97.5610 | 100.0000 | 76.3314 | 40 | 1 | 40 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l100_m2_e0 | hetalt | 98.7952 | 97.6190 | 100.0000 | 78.0749 | 41 | 1 | 41 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l100_m2_e1 | hetalt | 98.8235 | 97.6744 | 100.0000 | 77.6596 | 42 | 1 | 42 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.1538 | 9 | 0 | 9 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l125_m1_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 76.9841 | 29 | 1 | 29 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l125_m2_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 79.7203 | 29 | 1 | 29 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l125_m2_e1 | hetalt | 98.3051 | 96.6667 | 100.0000 | 79.7203 | 29 | 1 | 29 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l150_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 82.4074 | 19 | 1 | 19 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l150_m2_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 83.8983 | 19 | 1 | 19 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l150_m2_e1 | hetalt | 97.4359 | 95.0000 | 100.0000 | 84.0336 | 19 | 1 | 19 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.5484 | 4 | 0 | 4 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7536 | 5 | 0 | 5 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7536 | 5 | 0 | 5 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_siren | hetalt | 98.7500 | 97.5309 | 100.0000 | 72.9452 | 79 | 2 | 79 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1579 | 7 | 0 | 7 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 57.6087 | 39 | 0 | 39 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | decoy | * | 88.8889 | 80.0000 | 100.0000 | 99.9788 | 8 | 2 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | decoy | het | 80.0000 | 66.6667 | 100.0000 | 99.9877 | 4 | 2 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.9050 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9296 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 69.2308 | 4 | 1 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.7805 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.6395 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 40.0000 | 25.0000 | 100.0000 | 99.9117 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 50.0000 | 100.0000 | 99.5327 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 11.7647 | 6.2500 | 100.0000 | 99.9953 | 1 | 15 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 60.0000 | 42.8571 | 100.0000 | 99.9796 | 9 | 12 | 10 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 82.0755 | 69.6000 | 100.0000 | 36.4964 | 87 | 38 | 87 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 94.3820 | 89.3617 | 100.0000 | 56.7010 | 42 | 5 | 42 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l100_m0_e0 | hetalt | 68.0000 | 51.5152 | 100.0000 | 97.2447 | 17 | 16 | 17 | 0 | 0 | ||