PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48401-48450 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 47.9368 | 36.5290 | 69.7055 | 72.0207 | 2229 | 3873 | 9137 | 3971 | 2851 | 71.7955 | |
| ciseli-custom | SNP | ti | map_l250_m2_e1 | het | 64.3765 | 59.8060 | 69.7034 | 93.5598 | 1973 | 1326 | 1974 | 858 | 20 | 2.3310 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 63.3512 | 58.0645 | 69.6970 | 83.6836 | 90 | 65 | 92 | 40 | 39 | 97.5000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e0 | het | 79.0507 | 91.3043 | 69.6970 | 89.1089 | 42 | 4 | 69 | 30 | 19 | 63.3333 | |
| jpowers-varprowl | INDEL | I6_15 | map_siren | het | 74.0667 | 79.0210 | 69.6970 | 82.9193 | 113 | 30 | 115 | 50 | 50 | 100.0000 | |
| anovak-vg | INDEL | * | map_l150_m2_e0 | homalt | 76.2649 | 84.1996 | 69.6970 | 88.0938 | 405 | 76 | 414 | 180 | 160 | 88.8889 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 63.9682 | 59.1207 | 69.6815 | 44.3739 | 8741 | 6044 | 8729 | 3798 | 3701 | 97.4460 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 69.3125 | 68.9655 | 69.6629 | 88.8471 | 60 | 27 | 62 | 27 | 20 | 74.0741 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m1_e0 | het | 78.1102 | 88.8889 | 69.6629 | 87.0262 | 112 | 14 | 186 | 81 | 8 | 9.8765 | |
| anovak-vg | SNP | tv | map_l100_m0_e0 | het | 78.7491 | 90.6120 | 69.6328 | 77.9564 | 6544 | 678 | 6542 | 2853 | 767 | 26.8840 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 40.2264 | 28.2838 | 69.6252 | 65.8356 | 1503 | 3811 | 1412 | 616 | 90 | 14.6104 | |
| jpowers-varprowl | INDEL | D6_15 | map_l100_m0_e0 | het | 79.1367 | 91.6667 | 69.6203 | 89.0733 | 55 | 5 | 55 | 24 | 21 | 87.5000 | |
| anovak-vg | SNP | * | map_l250_m2_e1 | * | 75.2143 | 81.7954 | 69.6133 | 91.5868 | 6533 | 1454 | 6481 | 2829 | 654 | 23.1177 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 79.4844 | 92.6189 | 69.6125 | 45.3619 | 3388 | 270 | 3395 | 1482 | 1473 | 99.3927 | |
| mlin-fermikit | INDEL | * | map_l100_m0_e0 | homalt | 68.0723 | 66.6012 | 69.6099 | 79.4167 | 339 | 170 | 339 | 148 | 123 | 83.1081 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 74.4186 | 80.0000 | 69.5652 | 99.3068 | 16 | 4 | 16 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m0_e0 | * | 46.3768 | 34.7826 | 69.5652 | 93.9153 | 16 | 30 | 16 | 7 | 6 | 85.7143 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 69.5652 | 96.0684 | 0 | 0 | 16 | 7 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m2_e0 | het | 77.9177 | 88.5496 | 69.5652 | 87.5000 | 116 | 15 | 192 | 84 | 9 | 10.7143 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 75.1699 | 81.7568 | 69.5652 | 72.8346 | 121 | 27 | 96 | 42 | 42 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 72.3231 | 75.3086 | 69.5652 | 73.6390 | 61 | 20 | 64 | 28 | 28 | 100.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 50.0000 | 39.0244 | 69.5652 | 97.8976 | 16 | 25 | 16 | 7 | 2 | 28.5714 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m1_e0 | het | 47.3921 | 35.9375 | 69.5652 | 94.6882 | 23 | 41 | 16 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 68.6126 | 67.6959 | 69.5544 | 59.1226 | 3464 | 1653 | 5010 | 2193 | 1686 | 76.8810 | |
| ciseli-custom | SNP | ti | map_l250_m2_e0 | het | 64.2691 | 59.7419 | 69.5388 | 93.5208 | 1944 | 1310 | 1945 | 852 | 20 | 2.3474 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 75.8613 | 83.4547 | 69.5344 | 53.8102 | 802 | 159 | 687 | 301 | 288 | 95.6811 | |
| anovak-vg | SNP | * | map_l250_m2_e0 | * | 75.1311 | 81.7121 | 69.5312 | 91.5463 | 6443 | 1442 | 6392 | 2801 | 650 | 23.2060 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 63.8406 | 59.0164 | 69.5238 | 78.0335 | 72 | 50 | 73 | 32 | 31 | 96.8750 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m0_e0 | homalt | 67.8201 | 66.2162 | 69.5035 | 79.0490 | 98 | 50 | 98 | 43 | 39 | 90.6977 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 19.1153 | 11.0818 | 69.4915 | 82.2823 | 42 | 337 | 41 | 18 | 11 | 61.1111 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 61.1186 | 54.5495 | 69.4865 | 69.7213 | 8597 | 7163 | 10095 | 4433 | 1247 | 28.1299 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 68.0394 | 66.6667 | 69.4698 | 94.6639 | 2 | 1 | 380 | 167 | 40 | 23.9521 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 79.3320 | 92.4675 | 69.4643 | 60.8392 | 356 | 29 | 389 | 171 | 153 | 89.4737 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 78.8266 | 91.1111 | 69.4611 | 67.7606 | 41 | 4 | 116 | 51 | 30 | 58.8235 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 76.6206 | 85.4508 | 69.4444 | 82.3834 | 417 | 71 | 425 | 187 | 171 | 91.4439 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 36.9771 | 25.1969 | 69.4444 | 73.3333 | 32 | 95 | 25 | 11 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | * | * | 65.0191 | 61.1567 | 69.4022 | 48.8917 | 15957 | 10135 | 16034 | 7069 | 5706 | 80.7186 | |
| anovak-vg | INDEL | * | map_l150_m2_e1 | homalt | 76.1446 | 84.3496 | 69.3944 | 88.0547 | 415 | 77 | 424 | 187 | 167 | 89.3048 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 62.0650 | 56.1404 | 69.3878 | 99.4106 | 32 | 25 | 34 | 15 | 8 | 53.3333 | |
| mlin-fermikit | SNP | tv | map_l150_m1_e0 | homalt | 59.5283 | 52.1287 | 69.3761 | 55.9108 | 2057 | 1889 | 2057 | 908 | 841 | 92.6211 | |
| gduggal-snapvard | INDEL | D6_15 | map_siren | het | 75.8046 | 83.5714 | 69.3587 | 81.7036 | 234 | 46 | 292 | 129 | 84 | 65.1163 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 60.6700 | 53.9166 | 69.3576 | 54.0626 | 3063 | 2618 | 3239 | 1431 | 1089 | 76.1006 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 50.0000 | 39.0909 | 69.3548 | 97.6108 | 43 | 67 | 43 | 19 | 8 | 42.1053 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 63.1468 | 57.9627 | 69.3493 | 39.7938 | 404 | 293 | 405 | 179 | 173 | 96.6480 | |
| mlin-fermikit | SNP | ti | map_l250_m0_e0 | homalt | 50.6550 | 39.9083 | 69.3227 | 79.0659 | 174 | 262 | 174 | 77 | 71 | 92.2078 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 80.9421 | 97.2812 | 69.3022 | 61.0030 | 10806 | 302 | 10816 | 4791 | 4241 | 88.5201 | |
| jlack-gatk | INDEL | D6_15 | HG002compoundhet | het | 80.7008 | 96.6121 | 69.2893 | 65.6695 | 827 | 29 | 819 | 363 | 325 | 89.5317 | |
| anovak-vg | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 63.4822 | 58.5761 | 69.2853 | 62.7923 | 2131 | 1507 | 2249 | 997 | 694 | 69.6088 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 60.9623 | 54.4271 | 69.2810 | 72.5314 | 209 | 175 | 212 | 94 | 51 | 54.2553 | |
| ciseli-custom | SNP | ti | HG002compoundhet | * | 76.3715 | 85.1127 | 69.2586 | 41.8951 | 14876 | 2602 | 14928 | 6626 | 715 | 10.7908 | |