PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47351-47400 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 52.1739 | 40.0000 | 75.0000 | 63.6364 | 6 | 9 | 9 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 60.0000 | 50.0000 | 75.0000 | 60.0000 | 2 | 2 | 12 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m0_e0 | * | 27.2727 | 16.6667 | 75.0000 | 81.8182 | 1 | 5 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 75.0000 | 98.7441 | 0 | 0 | 6 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | func_cds | het | 75.0000 | 75.0000 | 75.0000 | 52.9412 | 6 | 2 | 6 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 75.0000 | 75.0000 | 75.0000 | 96.0784 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 75.0000 | 75.0000 | 75.0000 | 96.2264 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 75.0000 | 75.0000 | 75.0000 | 96.2617 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m1_e0 | * | 75.0000 | 75.0000 | 75.0000 | 95.3488 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 60.0000 | 50.0000 | 75.0000 | 97.9899 | 3 | 3 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 85.7143 | 100.0000 | 75.0000 | 99.8385 | 6 | 0 | 6 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 32.0388 | 20.3704 | 75.0000 | 58.7629 | 22 | 86 | 30 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 47.7273 | 35.0000 | 75.0000 | 70.9091 | 133 | 247 | 24 | 8 | 8 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 85.7143 | 100.0000 | 75.0000 | 98.6111 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 75.0000 | 75.0000 | 75.0000 | 98.8338 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 63.1579 | 54.5455 | 75.0000 | 88.3212 | 12 | 10 | 12 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 70.5882 | 66.6667 | 75.0000 | 62.9630 | 16 | 8 | 15 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l250_m1_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 92.1569 | 3 | 0 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l250_m2_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 92.8571 | 3 | 0 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l250_m2_e1 | homalt | 85.7143 | 100.0000 | 75.0000 | 93.1034 | 3 | 0 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 85.7143 | 100.0000 | 75.0000 | 97.3422 | 7 | 0 | 6 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 78.9474 | 83.3333 | 75.0000 | 90.5660 | 30 | 6 | 30 | 10 | 1 | 10.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l125_m1_e0 | het | 85.7143 | 100.0000 | 75.0000 | 91.7241 | 9 | 0 | 9 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l125_m2_e0 | het | 85.7143 | 100.0000 | 75.0000 | 92.9825 | 9 | 0 | 9 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l125_m2_e1 | het | 85.7143 | 100.0000 | 75.0000 | 93.1818 | 9 | 0 | 9 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | I16_PLUS | tech_badpromoters | * | 75.0000 | 75.0000 | 75.0000 | 75.0000 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 23.2461 | 13.7546 | 75.0000 | 92.9078 | 37 | 232 | 30 | 10 | 5 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 73.7542 | 72.5490 | 75.0000 | 92.6740 | 37 | 14 | 30 | 10 | 5 | 50.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l125_m0_e0 | het | 85.7143 | 100.0000 | 75.0000 | 97.7901 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 98.1900 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 85.7143 | 100.0000 | 75.0000 | 98.1900 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 81.3559 | 88.8889 | 75.0000 | 96.7742 | 24 | 3 | 3 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l250_m1_e0 | het | 75.0000 | 75.0000 | 75.0000 | 97.9167 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 56.7073 | 45.5882 | 75.0000 | 86.4865 | 31 | 37 | 30 | 10 | 5 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.7692 | 87.5000 | 75.0000 | 75.0000 | 7 | 1 | 6 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l125_m1_e0 | * | 19.3548 | 11.1111 | 75.0000 | 97.5309 | 3 | 24 | 3 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l125_m2_e0 | * | 19.3548 | 11.1111 | 75.0000 | 97.8378 | 3 | 24 | 3 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l125_m2_e1 | * | 18.7500 | 10.7143 | 75.0000 | 97.8610 | 3 | 25 | 3 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l150_m2_e0 | * | 28.5714 | 17.6471 | 75.0000 | 97.3510 | 3 | 14 | 3 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l150_m2_e1 | * | 27.2727 | 16.6667 | 75.0000 | 97.3856 | 3 | 15 | 3 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l150_m0_e0 | het | 25.0000 | 15.0000 | 75.0000 | 97.9695 | 3 | 17 | 3 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l250_m1_e0 | het | 40.0000 | 27.2727 | 75.0000 | 98.0952 | 3 | 8 | 3 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l250_m2_e0 | het | 33.3333 | 21.4286 | 75.0000 | 98.3607 | 3 | 11 | 3 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l250_m2_e1 | het | 33.3333 | 21.4286 | 75.0000 | 98.3806 | 3 | 11 | 3 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | map_siren | het | 11.3208 | 6.1224 | 75.0000 | 96.9466 | 3 | 46 | 3 | 1 | 0 | 0.0000 | |
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 42.8571 | 30.0000 | 75.0000 | 98.2143 | 3 | 7 | 3 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 75.0000 | 90.5882 | 0 | 0 | 6 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 75.0000 | 96.8254 | 0 | 0 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 75.0000 | 99.7623 | 0 | 0 | 6 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | C1_5 | segdup | hetalt | 0.0000 | 0.0000 | 75.0000 | 99.0888 | 0 | 0 | 3 | 1 | 1 | 100.0000 | |