PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
4651-4700 / 86044 show all
eyeh-varpipeINDELI6_15segduphetalt
47.4576
31.1111
100.0000
91.1243
14311500
eyeh-varpipeINDELI6_15tech_badpromoters*
91.6667
84.6154
100.0000
47.8261
1121200
eyeh-varpipeINDELI6_15tech_badpromotershet
92.3077
85.7143
100.0000
41.6667
61700
eyeh-varpipeINDELI6_15tech_badpromotershetalt
80.0000
66.6667
100.0000
33.3333
21200
eyeh-varpipeINDELI6_15tech_badpromotershomalt
100.0000
100.0000
100.0000
62.5000
30300
eyeh-varpipeSNP*decoy*
0.0000
0.0000
100.0000
99.9950
00600
eyeh-varpipeSNP*decoyhet
0.0000
0.0000
100.0000
99.9964
00300
eyeh-varpipeSNP*decoyhomalt
0.0000
0.0000
100.0000
99.9917
00300
eyeh-varpipeSNP*func_cdshetalt
100.0000
100.0000
100.0000
57.9545
1003700
eyeh-varpipeSNP*func_cdshomalt
99.9857
99.9713
100.0000
21.9335
69772688000
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
100.0000
90.8257
001000
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
86.2319
101900
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
85.5556
101300
eyeh-varpipeSNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
73.7598
1020100
eyeh-varpipeSNP*lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
100.0000
97.2222
00100
eyeh-varpipeSNP*lowcmp_SimpleRepeat_triTR_11to50hetalt
100.0000
100.0000
100.0000
57.8125
105400
eyeh-varpipeSNP*segdupwithalthomalt
0.0000
0.0000
100.0000
99.9987
00100
eyeh-varpipeSNP*tech_badpromotershomalt
100.0000
100.0000
100.0000
48.6667
8007700
eyeh-varpipeSNPtidecoy*
0.0000
0.0000
100.0000
99.9935
00500
eyeh-varpipeSNPtidecoyhet
0.0000
0.0000
100.0000
99.9962
00200
eyeh-varpipeSNPtidecoyhomalt
0.0000
0.0000
100.0000
99.9871
00300
eyeh-varpipeSNPtifunc_cdshetalt
100.0000
100.0000
100.0000
57.6923
803300
eyeh-varpipeSNPtifunc_cdshomalt
99.9810
99.9621
100.0000
20.7688
52732521500
eyeh-varpipeSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
100.0000
91.2088
00800
eyeh-varpipeSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
84.2105
101200
eyeh-varpipeSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
82.0513
10700
eyeh-varpipeSNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
85.8696
105200
eyeh-varpipeSNPtilowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
100.0000
95.2381
00100
eyeh-varpipeSNPtilowcmp_SimpleRepeat_triTR_11to50hetalt
100.0000
100.0000
100.0000
71.4286
101400
eyeh-varpipeSNPtimap_l100_m0_e0hetalt
100.0000
100.0000
100.0000
68.8705
14011300
eyeh-varpipeSNPtimap_l125_m0_e0hetalt
100.0000
100.0000
100.0000
75.0988
806300
eyeh-varpipeSNPtimap_l125_m1_e0hetalt
100.0000
100.0000
100.0000
67.5456
24016000
eyeh-varpipeSNPtimap_l125_m2_e0hetalt
100.0000
100.0000
100.0000
69.4885
24017300
eyeh-varpipeSNPtimap_l125_m2_e1hetalt
100.0000
100.0000
100.0000
69.2308
24017600
eyeh-varpipeSNPtimap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
78.1726
304300
eyeh-varpipeSNPtimap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
71.8157
15010400
eyeh-varpipeSNPtimap_l150_m2_e0hetalt
100.0000
100.0000
100.0000
73.2861
15011300
eyeh-varpipeSNPtimap_l150_m2_e1hetalt
100.0000
100.0000
100.0000
73.0679
15011500
eyeh-varpipeSNPtimap_l250_m0_e0hetalt
0.0000
0.0000
100.0000
94.3182
00500
eyeh-varpipeSNPtimap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
86.8571
402300
eyeh-varpipeSNPtimap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
86.8293
502700
eyeh-varpipeSNPtimap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
87.0813
502700
eyeh-varpipeSNPtisegdupwithalthomalt
0.0000
0.0000
100.0000
99.9980
00100
eyeh-varpipeSNPtitech_badpromotershomalt
100.0000
100.0000
100.0000
44.5946
4104100
eyeh-varpipeSNPtvdecoy*
0.0000
0.0000
100.0000
99.9914
00400
eyeh-varpipeSNPtvdecoyhet
0.0000
0.0000
100.0000
99.9939
00200
eyeh-varpipeSNPtvdecoyhomalt
0.0000
0.0000
100.0000
99.9851
00200
eyeh-varpipeSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
67.8571
1001800
eyeh-varpipeSNPtvfunc_cdshomalt
100.0000
100.0000
100.0000
26.3664
17040168400
eyeh-varpipeSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
100.0000
91.7431
00900