PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4601-4650 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 94.2748 | 7 | 2 | 15 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 93.9850 | 8 | 2 | 16 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0874 | 2 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1240 | 2 | 0 | 5 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2121 | 2 | 0 | 5 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | segdupwithalt | * | 0.0000 | 0.0000 | 100.0000 | 99.9922 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | segdupwithalt | het | 0.0000 | 0.0000 | 100.0000 | 99.9858 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 54.1667 | 22 | 0 | 22 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 40.0000 | 8 | 0 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 58.6207 | 13 | 0 | 12 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | func_cds | het | 88.3721 | 79.1667 | 100.0000 | 29.6296 | 19 | 5 | 19 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | func_cds | homalt | 96.5517 | 93.3333 | 100.0000 | 22.2222 | 14 | 1 | 14 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 96.8421 | 0 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 96.2264 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 87.5000 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 96.7391 | 0 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 96.1538 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 85.7143 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 40.0000 | 25.0000 | 100.0000 | 79.5455 | 11 | 33 | 36 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 100.0000 | 97.2973 | 0 | 2 | 5 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 100.0000 | 85.7143 | 0 | 1 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 100.0000 | 75.0000 | 0 | 12 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 68.8889 | 2 | 2 | 14 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 62.5000 | 45.4545 | 100.0000 | 64.7059 | 10 | 12 | 30 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 62.5000 | 45.4545 | 100.0000 | 66.2921 | 10 | 12 | 30 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 62.5000 | 45.4545 | 100.0000 | 65.9341 | 10 | 12 | 31 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 76.9231 | 0 | 0 | 6 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 73.5849 | 5 | 3 | 14 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 74.1379 | 5 | 3 | 15 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 76.9231 | 62.5000 | 100.0000 | 74.1379 | 5 | 3 | 15 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.5405 | 4 | 0 | 7 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 76.9231 | 2 | 1 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 76.7442 | 2 | 1 | 10 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 76.7442 | 2 | 1 | 10 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.4602 | 1 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 100.0000 | 96.4912 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 1 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l250_m1_e0 | * | 83.3333 | 71.4286 | 100.0000 | 93.5323 | 5 | 2 | 13 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l250_m1_e0 | het | 66.6667 | 50.0000 | 100.0000 | 95.1923 | 2 | 2 | 5 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.3614 | 3 | 0 | 8 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l250_m2_e0 | * | 85.7143 | 75.0000 | 100.0000 | 92.6606 | 6 | 2 | 16 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l250_m2_e0 | het | 75.0000 | 60.0000 | 100.0000 | 95.4128 | 3 | 2 | 5 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 88.8889 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.1099 | 3 | 0 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l250_m2_e1 | * | 85.7143 | 75.0000 | 100.0000 | 92.8571 | 6 | 2 | 16 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l250_m2_e1 | het | 75.0000 | 60.0000 | 100.0000 | 95.6140 | 3 | 2 | 5 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 100.0000 | 88.8889 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.2174 | 3 | 0 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_siren | hetalt | 46.8085 | 30.5556 | 100.0000 | 73.7226 | 22 | 50 | 36 | 0 | 0 | ||