PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45851-45900 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m0_e0 | * | 72.7273 | 66.6667 | 80.0000 | 90.1961 | 4 | 2 | 4 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m0_e0 | * | 88.8889 | 100.0000 | 80.0000 | 87.1795 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m1_e0 | * | 76.1905 | 72.7273 | 80.0000 | 87.9518 | 8 | 3 | 8 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m2_e0 | * | 76.1905 | 72.7273 | 80.0000 | 89.4737 | 8 | 3 | 8 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m2_e1 | * | 76.1905 | 72.7273 | 80.0000 | 89.4737 | 8 | 3 | 8 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 88.8889 | 100.0000 | 80.0000 | 99.4166 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 88.8889 | 100.0000 | 80.0000 | 99.3998 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 92.5373 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | het | 84.2105 | 88.8889 | 80.0000 | 97.1910 | 8 | 1 | 8 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.3958 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.8889 | 100.0000 | 80.0000 | 79.1667 | 24 | 0 | 24 | 6 | 6 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l250_m2_e0 | het | 80.0000 | 80.0000 | 80.0000 | 97.6852 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l250_m2_e1 | het | 80.0000 | 80.0000 | 80.0000 | 97.7578 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 40.6780 | 27.2727 | 80.0000 | 86.4865 | 3 | 8 | 4 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 80.0000 | 80.0000 | 80.0000 | 99.5362 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 92.1875 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 80.0000 | 80.0000 | 97.6526 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.6415 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.9920 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 98.0469 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l250_m1_e0 | * | 88.8889 | 100.0000 | 80.0000 | 98.5207 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 64.0000 | 53.3333 | 80.0000 | 81.4815 | 8 | 7 | 8 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_siren | homalt | 20.5128 | 11.7647 | 80.0000 | 90.1961 | 4 | 30 | 4 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 72.7273 | 66.6667 | 80.0000 | 95.9514 | 10 | 5 | 8 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 72.7273 | 66.6667 | 80.0000 | 96.0630 | 10 | 5 | 8 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 77.6371 | 75.4098 | 80.0000 | 77.2727 | 46 | 15 | 48 | 12 | 9 | 75.0000 | |
| ckim-isaac | INDEL | I16_PLUS | map_siren | * | 8.7912 | 4.6512 | 80.0000 | 97.2376 | 4 | 82 | 4 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.8889 | 100.0000 | 80.0000 | 91.8033 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l150_m0_e0 | * | 88.8889 | 100.0000 | 80.0000 | 98.3108 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.8889 | 100.0000 | 80.0000 | 79.4521 | 24 | 0 | 24 | 6 | 6 | 100.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 88.8889 | 100.0000 | 80.0000 | 99.5069 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 80.0000 | 99.9773 | 0 | 0 | 16 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l250_m0_e0 | het | 88.8889 | 100.0000 | 80.0000 | 98.3660 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m0_e0 | * | 76.1905 | 72.7273 | 80.0000 | 91.2281 | 8 | 3 | 8 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | tech_badpromoters | het | 88.8889 | 100.0000 | 80.0000 | 60.0000 | 8 | 0 | 8 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | func_cds | het | 88.8889 | 100.0000 | 80.0000 | 45.4545 | 24 | 0 | 24 | 6 | 6 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m1_e0 | homalt | 66.6667 | 57.1429 | 80.0000 | 87.5000 | 4 | 3 | 4 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e0 | homalt | 66.6667 | 57.1429 | 80.0000 | 90.0000 | 4 | 3 | 4 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 3.5874 | 1.8349 | 80.0000 | 78.6325 | 16 | 856 | 20 | 5 | 4 | 80.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 32.0000 | 20.0000 | 80.0000 | 67.7419 | 7 | 28 | 8 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 53.3333 | 40.0000 | 80.0000 | 75.0000 | 2 | 3 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 53.3333 | 40.0000 | 80.0000 | 78.2609 | 2 | 3 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 53.3333 | 40.0000 | 80.0000 | 79.1667 | 2 | 3 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 88.8889 | 100.0000 | 80.0000 | 98.2818 | 6 | 0 | 4 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | tech_badpromoters | * | 88.8889 | 100.0000 | 80.0000 | 62.3656 | 85 | 0 | 84 | 21 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 75.0000 | 70.5882 | 80.0000 | 99.5336 | 12 | 5 | 12 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 88.8889 | 100.0000 | 80.0000 | 97.1989 | 9 | 0 | 8 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | * | decoy | * | 80.0000 | 80.0000 | 80.0000 | 99.9657 | 8 | 2 | 8 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 44.4444 | 30.7692 | 80.0000 | 37.5000 | 4 | 9 | 4 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | C6_15 | HG002complexvar | het | 88.8889 | 100.0000 | 80.0000 | 93.6709 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |