PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45751-45800 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m2_e0 | * | 76.1905 | 72.7273 | 80.0000 | 90.4762 | 8 | 3 | 8 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m2_e1 | * | 76.1905 | 72.7273 | 80.0000 | 90.4762 | 8 | 3 | 8 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m0_e0 | het | 82.0513 | 84.2105 | 80.0000 | 97.7778 | 16 | 3 | 16 | 4 | 2 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l250_m2_e0 | * | 80.0000 | 80.0000 | 80.0000 | 99.4944 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l250_m2_e1 | * | 80.0000 | 80.0000 | 80.0000 | 99.4985 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | segdup | het | 86.6873 | 94.5946 | 80.0000 | 94.4030 | 35 | 2 | 36 | 9 | 8 | 88.8889 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 10.5263 | 5.6338 | 80.0000 | 83.3333 | 4 | 67 | 4 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l150_m2_e0 | het | 87.1287 | 95.6522 | 80.0000 | 92.8664 | 44 | 2 | 44 | 11 | 11 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m0_e0 | homalt | 72.7273 | 66.6667 | 80.0000 | 85.7143 | 4 | 2 | 4 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e1 | homalt | 61.5385 | 50.0000 | 80.0000 | 91.8033 | 4 | 4 | 4 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 80.0000 | 97.9757 | 0 | 0 | 4 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 80.0000 | 95.1923 | 0 | 0 | 4 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 80.0000 | 97.5689 | 0 | 0 | 12 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 80.0000 | 97.5248 | 0 | 0 | 4 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 80.0000 | 96.0630 | 0 | 0 | 4 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 80.0000 | 96.2687 | 0 | 0 | 4 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | segdup | het | 0.0000 | 0.0000 | 80.0000 | 96.2121 | 0 | 0 | 4 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 83.0601 | 86.3636 | 80.0000 | 75.4902 | 19 | 3 | 20 | 5 | 5 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m1_e0 | het | 72.7273 | 66.6667 | 80.0000 | 80.0000 | 4 | 2 | 4 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m2_e0 | het | 72.7273 | 66.6667 | 80.0000 | 81.4815 | 4 | 2 | 4 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m2_e1 | het | 72.7273 | 66.6667 | 80.0000 | 81.4815 | 4 | 2 | 4 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 80.0000 | 97.8070 | 0 | 0 | 4 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 80.0000 | 94.6809 | 0 | 0 | 4 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 80.0000 | 96.0938 | 0 | 0 | 4 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | segdup | het | 0.0000 | 0.0000 | 80.0000 | 96.4539 | 0 | 0 | 4 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | * | 88.8889 | 100.0000 | 80.0000 | 98.2079 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.8889 | 100.0000 | 80.0000 | 80.0000 | 24 | 0 | 24 | 6 | 6 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m1_e0 | het | 80.0000 | 80.0000 | 80.0000 | 96.6292 | 12 | 3 | 12 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e0 | het | 80.0000 | 80.0000 | 80.0000 | 97.0060 | 12 | 3 | 12 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l250_m1_e0 | * | 66.6667 | 57.1429 | 80.0000 | 98.7277 | 4 | 3 | 4 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 68.0851 | 59.2593 | 80.0000 | 96.0239 | 16 | 11 | 16 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.8355 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.8903 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m0_e0 | het | 57.1429 | 44.4444 | 80.0000 | 96.3768 | 4 | 5 | 4 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m1_e0 | * | 66.6667 | 57.1429 | 80.0000 | 97.7169 | 4 | 3 | 4 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 88.8889 | 100.0000 | 80.0000 | 99.4469 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 88.8889 | 100.0000 | 80.0000 | 99.0602 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 88.8889 | 100.0000 | 80.0000 | 99.0366 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 88.8889 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.3235 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.9880 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.0414 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.8889 | 100.0000 | 80.0000 | 90.5660 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l150_m0_e0 | * | 88.8889 | 100.0000 | 80.0000 | 97.0588 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I6_15 | map_l250_m1_e0 | * | 66.6667 | 57.1429 | 80.0000 | 97.5962 | 4 | 3 | 4 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.8889 | 100.0000 | 80.0000 | 91.2281 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 80.0000 | 80.0000 | 80.0000 | 97.8903 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 80.0000 | 80.0000 | 80.0000 | 98.1132 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 80.0000 | 80.0000 | 80.0000 | 98.1203 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | * | 88.8889 | 100.0000 | 80.0000 | 98.3607 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |