PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
4501-4550 / 86044 show all
gduggal-bwaplatINDELI6_15map_l150_m2_e0hetalt
100.0000
100.0000
100.0000
95.0000
30300
gduggal-bwaplatINDELI6_15map_l150_m2_e0homalt
60.0000
42.8571
100.0000
97.1963
34300
gduggal-bwaplatINDELI6_15map_l150_m2_e1*
71.4286
55.5556
100.0000
97.6744
15121500
gduggal-bwaplatINDELI6_15map_l150_m2_e1het
66.6667
50.0000
100.0000
98.2906
88800
gduggal-bwaplatINDELI6_15map_l150_m2_e1hetalt
100.0000
100.0000
100.0000
95.1613
30300
gduggal-bwaplatINDELI6_15map_l150_m2_e1homalt
66.6667
50.0000
100.0000
96.5217
44400
gduggal-bwaplatINDELI6_15map_l250_m1_e0*
44.4444
28.5714
100.0000
99.3750
25200
gduggal-bwaplatINDELI6_15map_l250_m1_e0het
40.0000
25.0000
100.0000
99.5833
13100
gduggal-bwaplatINDELI6_15map_l250_m1_e0homalt
50.0000
33.3333
100.0000
98.2143
12100
gduggal-bwaplatINDELI6_15map_l250_m2_e0*
54.5455
37.5000
100.0000
99.1690
35300
gduggal-bwaplatINDELI6_15map_l250_m2_e0het
57.1429
40.0000
100.0000
99.2701
23200
gduggal-bwaplatINDELI6_15map_l250_m2_e0homalt
50.0000
33.3333
100.0000
98.3051
12100
gduggal-bwaplatINDELI6_15map_l250_m2_e1*
54.5455
37.5000
100.0000
99.2063
35300
gduggal-bwaplatINDELI6_15map_l250_m2_e1het
57.1429
40.0000
100.0000
99.3007
23200
gduggal-bwaplatINDELI6_15map_l250_m2_e1homalt
50.0000
33.3333
100.0000
98.3871
12100
gduggal-bwaplatINDELI6_15map_sirenhetalt
75.8621
61.1111
100.0000
87.2093
44284400
gduggal-bwaplatINDELI6_15segduphomalt
90.6977
82.9787
100.0000
93.1860
3983700
gduggal-bwaplatINDELI6_15tech_badpromoters*
76.1905
61.5385
100.0000
70.3704
85800
gduggal-bwaplatINDELI6_15tech_badpromotershet
83.3333
71.4286
100.0000
70.5882
52500
gduggal-bwaplatINDELI6_15tech_badpromotershetalt
80.0000
66.6667
100.0000
50.0000
21200
gduggal-bwaplatINDELI6_15tech_badpromotershomalt
50.0000
33.3333
100.0000
83.3333
12100
gduggal-bwaplatSNP*HG002compoundhethetalt
96.3319
92.9234
100.0000
22.7493
8016179800
gduggal-bwaplatSNP*func_cdshetalt
94.7368
90.0000
100.0000
57.1429
91900
gduggal-bwaplatSNP*func_cdshomalt
99.5972
99.1976
100.0000
22.2746
692356692300
gduggal-bwaplatSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
86.9565
76.9231
100.0000
84.3750
1031000
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
92.8571
86.6667
100.0000
96.9838
1321300
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
97.4506
95.0280
100.0000
56.4672
152980152800
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
87.5000
10100
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
93.3712
87.5666
100.0000
59.6774
1972280197500
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
83.3333
10100
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
91.0595
83.5864
100.0000
65.1965
1156227116000
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
50.0000
33.3333
100.0000
98.6486
12100
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
92.8571
86.6667
100.0000
96.9838
1321300
gduggal-bwaplatSNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
77.2727
50500
gduggal-bwaplatSNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
88.8889
80.0000
100.0000
55.5556
41400
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
86.6667
20200
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
80.0000
10100
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
83.3333
10100
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
9.8039
5.1546
100.0000
72.7273
592600
eyeh-varpipeINDELD6_15map_l100_m0_e0hetalt
41.6667
26.3158
100.0000
86.7925
5141400
eyeh-varpipeINDELD6_15map_l100_m1_e0hetalt
38.0952
23.5294
100.0000
84.7826
16522800
eyeh-varpipeINDELD6_15map_l100_m2_e0hetalt
38.0952
23.5294
100.0000
85.3535
16522900
eyeh-varpipeINDELD6_15map_l100_m2_e1hetalt
35.9551
21.9178
100.0000
84.8780
16573100
eyeh-varpipeINDELD6_15map_l125_m0_e0hetalt
50.0000
33.3333
100.0000
83.3333
241100
eyeh-varpipeINDELD6_15map_l125_m1_e0hetalt
64.2857
47.3684
100.0000
84.9057
9101600
eyeh-varpipeINDELD6_15map_l125_m2_e0hetalt
64.2857
47.3684
100.0000
86.6667
9101600
eyeh-varpipeINDELD6_15map_l125_m2_e1hetalt
62.0690
45.0000
100.0000
87.0968
9111600
eyeh-varpipeINDELD6_15map_l150_m0_e0het
100.0000
100.0000
100.0000
92.4138
2002200
eyeh-varpipeINDELD6_15map_l150_m0_e0hetalt
57.1429
40.0000
100.0000
91.6667
23400
eyeh-varpipeINDELD6_15map_l150_m1_e0hetalt
66.6667
50.0000
100.0000
88.3117
44900