PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45351-45400 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D6_15 | map_l125_m0_e0 | * | 77.7114 | 74.4681 | 81.2500 | 92.1824 | 35 | 12 | 39 | 9 | 7 | 77.7778 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m0_e0 | * | 81.2500 | 81.2500 | 81.2500 | 95.3148 | 26 | 6 | 26 | 6 | 6 | 100.0000 | |
| gduggal-snapplat | INDEL | * | tech_badpromoters | homalt | 53.0612 | 39.3939 | 81.2500 | 71.9298 | 13 | 20 | 13 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m0_e0 | * | 86.6667 | 92.8571 | 81.2500 | 94.6932 | 26 | 2 | 26 | 6 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 81.2500 | 93.8697 | 0 | 0 | 13 | 3 | 1 | 33.3333 | |
| mlin-fermikit | INDEL | * | map_l250_m1_e0 | * | 52.1158 | 38.3607 | 81.2500 | 92.0966 | 117 | 188 | 117 | 27 | 20 | 74.0741 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m1_e0 | homalt | 78.7879 | 76.4706 | 81.2500 | 88.3636 | 26 | 8 | 26 | 6 | 6 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | func_cds | homalt | 89.6552 | 100.0000 | 81.2500 | 50.0000 | 12 | 0 | 13 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m0_e0 | homalt | 82.2785 | 83.3333 | 81.2500 | 90.4762 | 10 | 2 | 13 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m0_e0 | * | 85.0785 | 89.2857 | 81.2500 | 90.6158 | 25 | 3 | 26 | 6 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m1_e0 | het | 76.4706 | 72.2222 | 81.2500 | 86.5546 | 13 | 5 | 13 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m2_e0 | het | 76.4706 | 72.2222 | 81.2500 | 88.6525 | 13 | 5 | 13 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m2_e1 | het | 76.4706 | 72.2222 | 81.2500 | 88.8889 | 13 | 5 | 13 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 80.2469 | 79.2683 | 81.2500 | 69.2308 | 65 | 17 | 65 | 15 | 15 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m0_e0 | het | 83.8710 | 86.6667 | 81.2500 | 98.8131 | 13 | 2 | 13 | 3 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m1_e0 | * | 35.9447 | 23.0769 | 81.2500 | 69.2308 | 6 | 20 | 13 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e0 | * | 35.9447 | 23.0769 | 81.2500 | 72.8814 | 6 | 20 | 13 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e1 | * | 35.9447 | 23.0769 | 81.2500 | 73.3333 | 6 | 20 | 13 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 81.2500 | 93.8697 | 0 | 0 | 13 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 72.2222 | 65.0000 | 81.2500 | 99.5143 | 13 | 7 | 13 | 3 | 2 | 66.6667 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 48.2226 | 34.2857 | 81.2500 | 96.9811 | 12 | 23 | 13 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m1_e0 | * | 67.0103 | 57.0175 | 81.2500 | 85.1852 | 65 | 49 | 65 | 15 | 15 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e1 | het | 81.2500 | 81.2500 | 81.2500 | 96.9112 | 13 | 3 | 13 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 81.2500 | 95.6757 | 0 | 0 | 13 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m1_e0 | het | 83.8710 | 86.6667 | 81.2500 | 93.6759 | 26 | 4 | 26 | 6 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m2_e0 | het | 83.8710 | 86.6667 | 81.2500 | 94.3860 | 26 | 4 | 26 | 6 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m2_e1 | het | 83.8710 | 86.6667 | 81.2500 | 94.5299 | 26 | 4 | 26 | 6 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l150_m2_e1 | het | 81.2500 | 81.2500 | 81.2500 | 96.7546 | 13 | 3 | 13 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | * | 83.8710 | 86.6667 | 81.2500 | 95.3033 | 78 | 12 | 78 | 18 | 6 | 33.3333 | |
| ciseli-custom | SNP | * | map_l100_m1_e0 | hetalt | 71.2329 | 63.4146 | 81.2500 | 73.7705 | 26 | 15 | 26 | 6 | 5 | 83.3333 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 70.2703 | 61.9048 | 81.2500 | 99.9411 | 13 | 8 | 13 | 3 | 1 | 33.3333 | |
| ciseli-custom | SNP | tv | map_l100_m1_e0 | hetalt | 71.2329 | 63.4146 | 81.2500 | 73.7705 | 26 | 15 | 26 | 6 | 5 | 83.3333 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 46.0118 | 32.0942 | 81.2424 | 56.6189 | 2685 | 5681 | 2681 | 619 | 531 | 85.7835 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 88.3620 | 96.8555 | 81.2380 | 64.5325 | 5421 | 176 | 5945 | 1373 | 1329 | 96.7953 | |
| qzeng-custom | INDEL | I16_PLUS | * | het | 85.2063 | 89.5879 | 81.2333 | 62.0542 | 2435 | 283 | 2740 | 633 | 156 | 24.6445 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 86.2248 | 91.8756 | 81.2289 | 81.5160 | 8391 | 742 | 8646 | 1998 | 399 | 19.9700 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 86.2248 | 91.8756 | 81.2289 | 81.5160 | 8391 | 742 | 8646 | 1998 | 399 | 19.9700 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m1_e0 | * | 87.8220 | 95.5882 | 81.2230 | 87.7784 | 1040 | 48 | 1315 | 304 | 98 | 32.2368 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 88.1577 | 96.3875 | 81.2227 | 77.7237 | 587 | 22 | 558 | 129 | 127 | 98.4496 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e0 | * | 75.2386 | 70.0758 | 81.2227 | 82.7430 | 185 | 79 | 186 | 43 | 33 | 76.7442 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 55.0977 | 41.6888 | 81.2222 | 64.9260 | 1570 | 2196 | 1462 | 338 | 247 | 73.0769 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 55.0977 | 41.6888 | 81.2222 | 64.9260 | 1570 | 2196 | 1462 | 338 | 247 | 73.0769 | |
| ciseli-custom | SNP | tv | map_l250_m1_e0 | homalt | 77.9222 | 74.8832 | 81.2183 | 87.6682 | 641 | 215 | 640 | 148 | 105 | 70.9459 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 89.3757 | 99.3548 | 81.2183 | 83.8259 | 154 | 1 | 160 | 37 | 34 | 91.8919 | |
| ckim-gatk | INDEL | D1_5 | map_l250_m2_e0 | het | 89.6296 | 100.0000 | 81.2081 | 97.1866 | 121 | 0 | 121 | 28 | 1 | 3.5714 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m2_e0 | homalt | 64.6707 | 53.7313 | 81.2030 | 84.0528 | 108 | 93 | 108 | 25 | 23 | 92.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 88.1960 | 96.5132 | 81.1986 | 71.1330 | 692 | 25 | 691 | 160 | 160 | 100.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m0_e0 | het | 88.7467 | 97.8528 | 81.1912 | 89.9796 | 319 | 7 | 518 | 120 | 44 | 36.6667 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 86.3348 | 92.1922 | 81.1772 | 59.7644 | 5160 | 437 | 5158 | 1196 | 1175 | 98.2441 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m1_e0 | * | 54.4256 | 40.9357 | 81.1765 | 90.6181 | 70 | 101 | 69 | 16 | 14 | 87.5000 | |