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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 898 899 900 901 902 903 904 905 906 ... 1720 1721 » 45051-45100 / 86044 show all
gduggal-bwafb	SNP	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	86.0465	90.2439	82.2222	92.8458	37	4	37	8	6	75.0000
jlack-gatk	SNP	*	map_l250_m0_e0	het	89.1456	97.3440	82.2210	96.2201	1466	40	1466	317	23	7.2555
gduggal-snapfb	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	82.7682	83.3333	82.2107	69.9221	470	94	476	103	33	32.0388
anovak-vg	INDEL	D1_5	map_l100_m0_e0	*	82.9849	83.7775	82.2072	86.7066	723	140	730	158	62	39.2405
eyeh-varpipe	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	73.5605	66.5605	82.2059	36.1952	627	315	2236	484	477	98.5537
ghariani-varprowl	INDEL	D6_15	map_l125_m2_e0	*	79.5082	76.9841	82.2034	92.3674	97	29	97	21	19	90.4762
hfeng-pmm2	INDEL	D16_PLUS	HG002compoundhet	het	86.2040	90.6173	82.2006	57.4966	367	38	254	55	53	96.3636
ghariani-varprowl	INDEL	*	*	het	89.6326	98.5731	82.1789	64.2989	191361	2770	191449	41517	38150	91.8901
gduggal-snapvard	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	81.9978	81.8182	82.1782	94.8258	90	20	83	18	6	33.3333
mlin-fermikit	SNP	*	map_l250_m2_e0	*	47.3085	33.2150	82.1776	79.9585	2619	5266	2619	568	495	87.1479
ciseli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	82.0644	81.9516	82.1775	73.4245	1117	246	1102	239	147	61.5063
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	88.9611	96.9686	82.1752	61.2865	2719	85	2720	590	583	98.8136
gduggal-bwaplat	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	59.1321	46.1872	82.1586	80.3718	745	868	746	162	24	14.8148
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	88.6737	96.3158	82.1551	76.7252	1281	49	1197	260	253	97.3077
gduggal-snapfb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	71.6758	63.5678	82.1546	59.3969	10619	6086	3241	704	487	69.1761
gduggal-snapfb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	71.6758	63.5678	82.1546	59.3969	10619	6086	3241	704	487	69.1761
gduggal-bwavard	INDEL	D1_5	map_l150_m2_e1	het	89.6534	98.6590	82.1543	92.0895	515	7	511	111	13	11.7117
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	82.8480	83.5616	82.1464	73.3422	732	144	819	178	170	95.5056
egarrison-hhga	INDEL	D16_PLUS	map_l100_m2_e0	*	78.7116	75.5556	82.1429	87.8613	68	22	69	15	11	73.3333
ckim-isaac	SNP	*	lowcmp_SimpleRepeat_diTR_51to200	*	65.7143	54.7619	82.1429	95.6923	23	19	23	5	0	0.0000
eyeh-varpipe	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	0.0000	0.0000	82.1429	96.4780	0	0	23	5	4	80.0000
qzeng-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	86.0387	90.3226	82.1429	92.1875	112	12	115	25	5	20.0000
gduggal-snapplat	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	41.1620	27.4615	82.1429	68.1214	410	1083	414	90	76	84.4444
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	90.1961	100.0000	82.1429	88.0342	23	0	23	5	4	80.0000
hfeng-pmm3	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	90.1961	100.0000	82.1429	87.8261	23	0	23	5	4	80.0000
ndellapenna-hhga	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	88.6139	96.1944	82.1409	64.2130	5384	213	6062	1318	1266	96.0546
gduggal-snapfb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	85.1837	88.4652	82.1369	53.6130	7401	965	7403	1610	1503	93.3540
eyeh-varpipe	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	71.6109	63.4771	82.1356	31.7350	471	271	2023	440	436	99.0909
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	54.1272	40.3636	82.1340	57.9332	333	492	331	72	71	98.6111
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	54.1272	40.3636	82.1340	57.9332	333	492	331	72	71	98.6111
ciseli-custom	INDEL	D1_5	map_l125_m2_e1	*	76.9744	72.4287	82.1289	90.9356	838	319	841	183	83	45.3552
jlack-gatk	INDEL	D1_5	map_l125_m0_e0	het	89.4716	98.2609	82.1256	91.8808	339	6	340	74	2	2.7027
jlack-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	88.8783	96.8421	82.1248	85.9711	644	21	487	106	95	89.6226
ciseli-custom	SNP	tv	map_l250_m2_e0	homalt	78.7009	75.5603	82.1138	88.5597	708	229	707	154	111	72.0779
qzeng-custom	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	*	88.5324	96.0396	82.1138	95.4326	97	4	101	22	2	9.0909
qzeng-custom	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	77.2082	72.8625	82.1053	86.6197	196	73	78	17	10	58.8235
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	88.1356	95.1220	82.1053	75.7653	78	4	78	17	17	100.0000
gduggal-snapvard	INDEL	D1_5	map_siren	het	89.3607	98.0237	82.1046	85.3259	2232	45	2606	568	243	42.7817
mlin-fermikit	INDEL	*	map_l250_m2_e1	*	53.7374	39.9399	82.0988	93.1530	133	200	133	29	21	72.4138
qzeng-custom	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	het	85.6204	89.4628	82.0945	59.1015	866	102	2728	595	253	42.5210
jpowers-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	87.3841	93.4028	82.0941	65.3887	538	38	541	118	116	98.3051
gduggal-snapvard	SNP	tv	map_l100_m0_e0	het	88.9755	97.1199	82.0913	81.3435	7014	208	6995	1526	80	5.2425
qzeng-custom	INDEL	D6_15	map_l125_m0_e0	*	80.3712	78.7234	82.0896	94.0603	37	10	55	12	2	16.6667
eyeh-varpipe	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	73.7796	66.9983	82.0883	30.1926	404	199	1934	422	418	99.0521
qzeng-custom	INDEL	D16_PLUS	HG002complexvar	het	88.4674	95.9350	82.0784	59.1925	1062	45	1319	288	45	15.6250
jpowers-varprowl	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	64.7210	53.4249	82.0746	70.9149	8322	7255	8292	1811	1705	94.1469
eyeh-varpipe	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	79.2133	76.5550	82.0628	67.6812	160	49	183	40	33	82.5000
eyeh-varpipe	INDEL	I6_15	*	*	71.2994	63.0343	82.0590	39.8519	15647	9176	15734	3440	3408	99.0698
mlin-fermikit	SNP	*	map_l100_m2_e1	homalt	74.4467	68.1285	82.0565	52.6294	18937	8859	18937	4141	3961	95.6532
gduggal-bwavard	INDEL	D1_5	map_l150_m2_e0	het	89.5859	98.6381	82.0555	92.0606	507	7	503	110	12	10.9091

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