PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44951-45000 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | D16_PLUS | map_siren | * | 87.4390 | 93.0070 | 82.5000 | 95.1981 | 133 | 10 | 132 | 28 | 3 | 10.7143 | |
| ckim-dragen | INDEL | D16_PLUS | map_siren | homalt | 89.1892 | 97.0588 | 82.5000 | 94.7368 | 33 | 1 | 33 | 7 | 2 | 28.5714 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m1_e0 | het | 75.4825 | 69.5652 | 82.5000 | 81.5668 | 32 | 14 | 33 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e0 | het | 73.7430 | 66.6667 | 82.5000 | 83.6735 | 32 | 16 | 33 | 7 | 7 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l250_m0_e0 | het | 90.4110 | 100.0000 | 82.5000 | 97.1711 | 33 | 0 | 33 | 7 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l250_m0_e0 | het | 90.4110 | 100.0000 | 82.5000 | 97.2918 | 33 | 0 | 33 | 7 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | ti | HG002compoundhet | het | 88.1728 | 94.6870 | 82.4973 | 54.5571 | 9000 | 505 | 9111 | 1933 | 19 | 0.9829 | |
| gduggal-bwavard | SNP | * | map_l150_m0_e0 | het | 89.4308 | 97.6574 | 82.4825 | 88.0388 | 7754 | 186 | 7675 | 1630 | 60 | 3.6810 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 82.4818 | 94.3177 | 0 | 1 | 113 | 24 | 14 | 58.3333 | |
| ciseli-custom | INDEL | D1_5 | map_l125_m1_e0 | het | 74.8992 | 68.5950 | 82.4793 | 92.0478 | 498 | 228 | 499 | 106 | 22 | 20.7547 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 9.8376 | 5.2308 | 82.4742 | 81.6635 | 51 | 924 | 80 | 17 | 16 | 94.1176 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 28.9593 | 17.5631 | 82.4742 | 66.3778 | 320 | 1502 | 320 | 68 | 51 | 75.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m0_e0 | het | 78.8177 | 75.4717 | 82.4742 | 97.1579 | 80 | 26 | 80 | 17 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | HG002compoundhet | het | 81.1158 | 79.8077 | 82.4675 | 86.8038 | 166 | 42 | 127 | 27 | 25 | 92.5926 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 89.7777 | 98.5185 | 82.4615 | 65.1288 | 266 | 4 | 268 | 57 | 36 | 63.1579 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 74.3375 | 67.6709 | 82.4611 | 55.4224 | 584 | 279 | 583 | 124 | 122 | 98.3871 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 40.0000 | 26.4045 | 82.4561 | 61.2245 | 47 | 131 | 47 | 10 | 10 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m2_e1 | het | 88.7476 | 96.0784 | 82.4561 | 95.1199 | 49 | 2 | 47 | 10 | 3 | 30.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | het | 85.8721 | 89.5833 | 82.4561 | 89.4834 | 43 | 5 | 47 | 10 | 5 | 50.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e0 | * | 78.3333 | 74.6032 | 82.4561 | 90.1299 | 94 | 32 | 94 | 20 | 19 | 95.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | het | 88.7476 | 96.0784 | 82.4561 | 96.6569 | 49 | 2 | 47 | 10 | 4 | 40.0000 | |
| mlin-fermikit | SNP | ti | map_l250_m0_e0 | * | 41.9162 | 28.1022 | 82.4411 | 81.5488 | 385 | 985 | 385 | 82 | 72 | 87.8049 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m0_e0 | * | 88.6400 | 95.8478 | 82.4405 | 93.2094 | 277 | 12 | 277 | 59 | 6 | 10.1695 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m1_e0 | het | 89.7380 | 98.4556 | 82.4387 | 88.3144 | 765 | 12 | 1075 | 229 | 105 | 45.8515 | |
| ciseli-custom | INDEL | D1_5 | HG002complexvar | * | 84.6887 | 87.0694 | 82.4348 | 57.7103 | 28483 | 4230 | 28182 | 6005 | 2638 | 43.9301 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 80.9804 | 79.5796 | 82.4314 | 68.2439 | 530 | 136 | 1112 | 237 | 115 | 48.5232 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 80.9804 | 79.5796 | 82.4314 | 68.2439 | 530 | 136 | 1112 | 237 | 115 | 48.5232 | |
| gduggal-bwaplat | INDEL | D1_5 | HG002compoundhet | het | 66.9499 | 56.3657 | 82.4278 | 83.5498 | 974 | 754 | 971 | 207 | 77 | 37.1981 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 85.1821 | 88.1350 | 82.4206 | 72.9298 | 5378 | 724 | 5448 | 1162 | 656 | 56.4544 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 83.2899 | 84.1808 | 82.4176 | 55.5375 | 149 | 28 | 225 | 48 | 45 | 93.7500 | |
| jlack-gatk | SNP | tv | map_l250_m2_e1 | het | 89.2982 | 97.4555 | 82.4010 | 94.1598 | 1915 | 50 | 1915 | 409 | 18 | 4.4010 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 89.3082 | 97.4828 | 82.3985 | 47.2449 | 426 | 11 | 426 | 91 | 91 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 72.0906 | 64.0796 | 82.3907 | 55.6695 | 644 | 361 | 641 | 137 | 133 | 97.0803 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 86.9474 | 92.0408 | 82.3881 | 83.0380 | 451 | 39 | 276 | 59 | 57 | 96.6102 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 89.6962 | 98.4278 | 82.3875 | 81.4243 | 2379 | 38 | 2381 | 509 | 127 | 24.9509 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 86.7002 | 91.4894 | 82.3875 | 75.9605 | 1247 | 116 | 1263 | 270 | 194 | 71.8519 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 88.9790 | 96.7259 | 82.3810 | 40.2277 | 2068 | 70 | 2076 | 444 | 4 | 0.9009 | |
| cchapple-custom | INDEL | D16_PLUS | map_l150_m1_e0 | * | 87.5000 | 93.3333 | 82.3529 | 95.3804 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l150_m1_e0 | het | 87.2902 | 92.8571 | 82.3529 | 94.3333 | 13 | 1 | 14 | 3 | 0 | 0.0000 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 72.4706 | 64.7059 | 82.3529 | 96.0465 | 11 | 6 | 14 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | * | 84.4221 | 86.5979 | 82.3529 | 95.1126 | 84 | 13 | 84 | 18 | 6 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_siren | het | 87.6125 | 93.5897 | 82.3529 | 95.8313 | 73 | 5 | 70 | 15 | 2 | 13.3333 | |
| jlack-gatk | INDEL | D1_5 | map_l250_m1_e0 | * | 89.6000 | 98.2456 | 82.3529 | 96.3309 | 168 | 3 | 168 | 36 | 1 | 2.7778 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e0 | het | 90.3226 | 100.0000 | 82.3529 | 97.3725 | 14 | 0 | 14 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e1 | het | 90.3226 | 100.0000 | 82.3529 | 97.4551 | 14 | 0 | 14 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m1_e0 | * | 87.5000 | 93.3333 | 82.3529 | 95.5145 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e0 | * | 87.5000 | 93.3333 | 82.3529 | 95.6522 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e1 | * | 87.5000 | 93.3333 | 82.3529 | 95.6633 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 87.5000 | 93.3333 | 82.3529 | 94.2568 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m0_e0 | het | 78.9744 | 75.8621 | 82.3529 | 94.6875 | 22 | 7 | 42 | 9 | 1 | 11.1111 | |