PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43901-43950 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 77.1234 | 70.6347 | 84.9247 | 50.6689 | 9737 | 4048 | 9864 | 1751 | 1570 | 89.6630 | |
| ciseli-custom | SNP | tv | map_l100_m2_e1 | het | 79.3676 | 74.5012 | 84.9142 | 77.0349 | 11874 | 4064 | 11871 | 2109 | 75 | 3.5562 | |
| ciseli-custom | SNP | tv | map_l125_m2_e0 | * | 79.3554 | 74.4800 | 84.9139 | 78.4079 | 12281 | 4208 | 12276 | 2181 | 537 | 24.6217 | |
| ghariani-varprowl | INDEL | * | map_l150_m0_e0 | * | 89.2989 | 94.1634 | 84.9123 | 96.4917 | 484 | 30 | 484 | 86 | 20 | 23.2558 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 79.1231 | 74.0733 | 84.9119 | 84.9242 | 3597 | 1259 | 3613 | 642 | 94 | 14.6417 | |
| mlin-fermikit | SNP | ti | map_l250_m2_e0 | * | 48.4805 | 33.9257 | 84.9075 | 79.7858 | 1699 | 3309 | 1699 | 302 | 258 | 85.4305 | |
| gduggal-snapplat | INDEL | D1_5 | func_cds | het | 81.7516 | 78.8235 | 84.9057 | 60.5948 | 67 | 18 | 90 | 16 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m0_e0 | * | 90.0000 | 95.7447 | 84.9057 | 94.0382 | 45 | 2 | 45 | 8 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | segdup | het | 90.9091 | 97.8261 | 84.9057 | 96.1483 | 90 | 2 | 90 | 16 | 2 | 12.5000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 83.5594 | 82.2599 | 84.9006 | 82.0181 | 2184 | 471 | 2221 | 395 | 339 | 85.8228 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 83.9138 | 82.9573 | 84.8926 | 46.2434 | 18458 | 3792 | 18538 | 3299 | 3068 | 92.9979 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 53.5399 | 39.1005 | 84.8881 | 55.0336 | 1817 | 2830 | 1820 | 324 | 282 | 87.0370 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 86.2568 | 87.6742 | 84.8845 | 71.5339 | 1195 | 168 | 1213 | 216 | 204 | 94.4444 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 43.3731 | 29.1284 | 84.8837 | 60.6107 | 127 | 309 | 219 | 39 | 39 | 100.0000 | |
| gduggal-bwavard | INDEL | * | map_siren | het | 90.9729 | 98.0035 | 84.8835 | 87.6032 | 4418 | 90 | 4408 | 785 | 417 | 53.1210 | |
| gduggal-bwavard | INDEL | C1_5 | HG002complexvar | * | 85.2929 | 85.7143 | 84.8757 | 79.2084 | 6 | 1 | 1605 | 286 | 106 | 37.0629 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m0_e0 | * | 90.7857 | 97.5806 | 84.8754 | 90.3137 | 484 | 12 | 477 | 85 | 9 | 10.5882 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 84.3168 | 83.7696 | 84.8712 | 76.9763 | 800 | 155 | 791 | 141 | 92 | 65.2482 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 29.7662 | 18.0480 | 84.8708 | 63.2791 | 233 | 1058 | 230 | 41 | 31 | 75.6098 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 50.6365 | 36.0825 | 84.8684 | 57.8947 | 140 | 248 | 129 | 23 | 23 | 100.0000 | |
| ciseli-custom | INDEL | * | func_cds | * | 84.1100 | 83.3708 | 84.8624 | 37.1758 | 371 | 74 | 370 | 66 | 30 | 45.4545 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 68.5647 | 57.5184 | 84.8624 | 93.9078 | 547 | 404 | 555 | 99 | 45 | 45.4545 | |
| mlin-fermikit | INDEL | * | map_l150_m2_e0 | * | 64.8581 | 52.4858 | 84.8624 | 85.1067 | 739 | 669 | 740 | 132 | 104 | 78.7879 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e0 | het | 81.1055 | 77.6699 | 84.8592 | 96.0935 | 240 | 69 | 241 | 43 | 1 | 2.3256 | |
| gduggal-snapvard | SNP | tv | map_l125_m2_e1 | het | 90.7385 | 97.4983 | 84.8553 | 82.7554 | 10289 | 264 | 10259 | 1831 | 116 | 6.3353 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e0 | het | 91.3057 | 98.8220 | 84.8519 | 90.7276 | 755 | 9 | 745 | 133 | 17 | 12.7820 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 90.3706 | 96.6600 | 84.8496 | 55.8282 | 9203 | 318 | 9196 | 1642 | 1614 | 98.2948 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 71.4933 | 61.7706 | 84.8485 | 75.6702 | 307 | 190 | 308 | 55 | 54 | 98.1818 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 84.3860 | 83.9286 | 84.8485 | 77.2727 | 141 | 27 | 140 | 25 | 23 | 92.0000 | |
| astatham-gatk | INDEL | D16_PLUS | segdup | * | 90.3226 | 96.5517 | 84.8485 | 96.3435 | 56 | 2 | 56 | 10 | 2 | 20.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 84.8485 | 96.8116 | 0 | 0 | 28 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.6463 | 80.5556 | 84.8485 | 92.3788 | 29 | 7 | 28 | 5 | 2 | 40.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 40.6561 | 26.7327 | 84.8485 | 99.0214 | 27 | 74 | 28 | 5 | 3 | 60.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l250_m1_e0 | het | 88.8889 | 93.3333 | 84.8485 | 97.8138 | 56 | 4 | 56 | 10 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 91.5902 | 99.5017 | 84.8442 | 51.7430 | 599 | 3 | 599 | 107 | 106 | 99.0654 | |
| ciseli-custom | SNP | tv | map_l100_m2_e0 | het | 79.2677 | 74.3804 | 84.8423 | 77.0207 | 11735 | 4042 | 11732 | 2096 | 75 | 3.5782 | |
| qzeng-custom | INDEL | C1_5 | * | * | 82.3488 | 80.0000 | 84.8397 | 96.6709 | 8 | 2 | 291 | 52 | 5 | 9.6154 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 81.8009 | 78.9787 | 84.8322 | 50.9671 | 11677 | 3108 | 11678 | 2088 | 2070 | 99.1379 | |
| mlin-fermikit | SNP | * | map_l100_m0_e0 | * | 59.6148 | 45.9548 | 84.8308 | 53.4081 | 15092 | 17749 | 15088 | 2698 | 2419 | 89.6590 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 90.1124 | 96.0968 | 84.8297 | 79.1299 | 1748 | 71 | 1644 | 294 | 276 | 93.8776 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 90.1124 | 96.0968 | 84.8297 | 79.1299 | 1748 | 71 | 1644 | 294 | 276 | 93.8776 | |
| gduggal-snapvard | INDEL | D1_5 | segdup | het | 90.8046 | 97.6879 | 84.8276 | 95.5414 | 676 | 16 | 861 | 154 | 123 | 79.8701 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 68.1699 | 56.9831 | 84.8219 | 60.1659 | 2089 | 1577 | 3096 | 554 | 345 | 62.2744 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 80.4772 | 76.5586 | 84.8185 | 64.9306 | 307 | 94 | 257 | 46 | 29 | 63.0435 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 89.7993 | 95.4044 | 84.8163 | 74.1070 | 1038 | 50 | 1039 | 186 | 169 | 90.8602 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 90.8579 | 97.8289 | 84.8143 | 63.2556 | 10499 | 233 | 10461 | 1873 | 64 | 3.4170 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m2_e0 | * | 83.2298 | 81.7073 | 84.8101 | 93.6342 | 67 | 15 | 67 | 12 | 11 | 91.6667 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 79.6040 | 75.0000 | 84.8101 | 64.2534 | 69 | 23 | 67 | 12 | 12 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e0 | het | 89.3333 | 94.3662 | 84.8101 | 93.8807 | 67 | 4 | 67 | 12 | 1 | 8.3333 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e1 | het | 89.3333 | 94.3662 | 84.8101 | 94.0197 | 67 | 4 | 67 | 12 | 1 | 8.3333 | |