PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4301-4350 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e0 | homalt | 78.2609 | 64.2857 | 100.0000 | 90.5263 | 18 | 10 | 18 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e1 | * | 75.9124 | 61.1765 | 100.0000 | 96.6858 | 52 | 33 | 52 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e1 | het | 74.6667 | 59.5745 | 100.0000 | 97.7162 | 28 | 19 | 28 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 71.4286 | 55.5556 | 100.0000 | 96.6216 | 5 | 4 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e1 | homalt | 79.1667 | 65.5172 | 100.0000 | 90.2564 | 19 | 10 | 19 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m1_e0 | * | 61.5385 | 44.4444 | 100.0000 | 99.0730 | 8 | 10 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m1_e0 | het | 62.5000 | 45.4545 | 100.0000 | 99.2690 | 5 | 6 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.7805 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m1_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 97.9381 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m2_e0 | * | 58.0645 | 40.9091 | 100.0000 | 99.0712 | 9 | 13 | 9 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m2_e0 | het | 60.0000 | 42.8571 | 100.0000 | 99.2126 | 6 | 8 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.9899 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 98.1481 | 2 | 4 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m2_e1 | * | 58.0645 | 40.9091 | 100.0000 | 99.0891 | 9 | 13 | 9 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m2_e1 | het | 60.0000 | 42.8571 | 100.0000 | 99.2288 | 6 | 8 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.0000 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 98.1818 | 2 | 4 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_siren | hetalt | 69.7368 | 53.5354 | 100.0000 | 90.6028 | 53 | 46 | 53 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_siren | homalt | 85.4626 | 74.6154 | 100.0000 | 85.9216 | 97 | 33 | 97 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | segdup | hetalt | 81.9277 | 69.3878 | 100.0000 | 94.3005 | 34 | 15 | 33 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | tech_badpromoters | * | 64.0000 | 47.0588 | 100.0000 | 72.4138 | 8 | 9 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | tech_badpromoters | het | 75.0000 | 60.0000 | 100.0000 | 68.4211 | 6 | 4 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | tech_badpromoters | homalt | 50.0000 | 33.3333 | 100.0000 | 80.0000 | 2 | 4 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | func_cds | * | 58.8235 | 41.6667 | 100.0000 | 72.2222 | 5 | 7 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | func_cds | het | 50.0000 | 33.3333 | 100.0000 | 70.0000 | 3 | 6 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 30.3571 | 17.8947 | 100.0000 | 94.0767 | 17 | 78 | 17 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 32.9114 | 19.6970 | 100.0000 | 90.5109 | 13 | 53 | 13 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 61.5385 | 44.4444 | 100.0000 | 77.1429 | 8 | 10 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 37.5940 | 23.1481 | 100.0000 | 88.3178 | 25 | 83 | 25 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 72.7273 | 57.1429 | 100.0000 | 68.2540 | 20 | 15 | 20 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 64.1221 | 47.1910 | 100.0000 | 79.8122 | 42 | 47 | 43 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 48.5714 | 32.0755 | 100.0000 | 84.9558 | 17 | 36 | 17 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 78.7879 | 65.0000 | 100.0000 | 60.6061 | 13 | 7 | 13 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 85.7143 | 75.0000 | 100.0000 | 80.5970 | 12 | 4 | 13 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 20.0000 | 11.1111 | 100.0000 | 97.3913 | 3 | 24 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 66.6667 | 50.0000 | 100.0000 | 91.6667 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 57.1429 | 40.0000 | 100.0000 | 91.3043 | 6 | 9 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 66.6667 | 50.0000 | 100.0000 | 65.8537 | 14 | 14 | 14 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 40.0000 | 25.0000 | 100.0000 | 89.1473 | 42 | 126 | 42 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 55.5556 | 38.4615 | 100.0000 | 91.4530 | 10 | 16 | 10 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 50.0000 | 33.3333 | 100.0000 | 98.5294 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 56.2500 | 39.1304 | 100.0000 | 75.6757 | 9 | 14 | 9 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 57.6923 | 40.5405 | 100.0000 | 85.4369 | 15 | 22 | 15 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 31.5789 | 18.7500 | 100.0000 | 94.2308 | 3 | 13 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 70.0000 | 53.8462 | 100.0000 | 75.0000 | 7 | 6 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 76.9231 | 62.5000 | 100.0000 | 78.2609 | 5 | 3 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m0_e0 | * | 16.6667 | 9.0909 | 100.0000 | 98.6301 | 1 | 10 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m0_e0 | het | 22.2222 | 12.5000 | 100.0000 | 98.1132 | 1 | 7 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m1_e0 | * | 32.2581 | 19.2308 | 100.0000 | 96.2406 | 5 | 21 | 5 | 0 | 0 | ||